6JJK
Crystal structure of the degp dodecamer with a modulator
PDB DOI: 10.2210/pdb6jjk/pdb
Classification: HYDROLASE Organism(s): Escherichia Coli K-12 , Synthetic Construct
Deposited: 2019-02-26 Deposition Author(s): Cho, H. , Choi, Y. , Kim, S. , Lee, H.H.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.6 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Periplasmic serine endoprotease DegP | A | 440 | Escherichia Coli K-12 , Synthetic Construct | AQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ |
| Periplasmic serine endoprotease DegP | B | 440 | Escherichia Coli K-12 , Synthetic Construct | AQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ |
| Periplasmic serine endoprotease DegP | C | 440 | Escherichia Coli K-12 , Synthetic Construct | AQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ |
| Periplasmic serine endoprotease DegP | D | 440 | Escherichia Coli K-12 , Synthetic Construct | AQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ |
| Periplasmic serine endoprotease DegP | E | 440 | Escherichia Coli K-12 , Synthetic Construct | AQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ |
| Periplasmic serine endoprotease DegP | F | 440 | Escherichia Coli K-12 , Synthetic Construct | AQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ |
| CYS-TYR-TYR-LYS-ILE | G | 5 | Escherichia Coli K-12 , Synthetic Construct | CYYKI |
| CYS-TYR-TYR-LYS-ILE | H | 5 | Escherichia Coli K-12 , Synthetic Construct | CYYKI |
| CYS-TYR-TYR-LYS-ILE | I | 5 | Escherichia Coli K-12 , Synthetic Construct | CYYKI |
| CYS-TYR-TYR-LYS-ILE | J | 5 | Escherichia Coli K-12 , Synthetic Construct | CYYKI |
| CYS-TYR-TYR-LYS-ILE | K | 5 | Escherichia Coli K-12 , Synthetic Construct | CYYKI |
| CYS-TYR-TYR-LYS-ILE | L | 5 | Escherichia Coli K-12 , Synthetic Construct | CYYKI |
| CYS-TYR-TYR-LYS-ILE | M | 5 | Escherichia Coli K-12 , Synthetic Construct | CYYKI |
| CYS-TYR-TYR-LYS-ILE | N | 5 | Escherichia Coli K-12 , Synthetic Construct | CYYKI |
| CYS-TYR-TYR-LYS-ILE | O | 5 | Escherichia Coli K-12 , Synthetic Construct | CYYKI |
| CYS-TYR-TYR-LYS-ILE | P | 5 | Escherichia Coli K-12 , Synthetic Construct | CYYKI |
| CYS-TYR-TYR-LYS-ILE | Q | 5 | Escherichia Coli K-12 , Synthetic Construct | CYYKI |
| CYS-TYR-TYR-LYS-ILE | R | 5 | Escherichia Coli K-12 , Synthetic Construct | CYYKI |
Experimental Data
Method: X-RAY DIFFRACTION