PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6IFM

Crystal structure of dna bound vapbc from salmonella typhimurium

PDB DOI: 10.2210/pdb6ifm/pdb

Classification: TOXIN/ANTITOXIN/DNA
Organism(s): Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 , Synthetic Construct

Deposited: 2018-09-20
Deposition Author(s): Lee, B.J. , Park, D.W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.804 Å

6ifm
Literature

Crystal structure of dna bound vapbc from salmonella typhimurium

Lee, B.J. , Park, D.W.

Primary Citation of Related Structures: 6IFM


Proteins
Molecule Chains Sequence Length Organism Sequence
tRNA(fMet)-specific endonuclease VapC A 132 Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 , Synthetic Construct MLKFMLDTNTCIFTIKNKPEHIRERFNLNTSRMCISSITLMELIYGAEKSLAPERNLAVVEGFISRLEVLDYDTQAAIHTGQIRAELARKGTPVGPYDQMIAGHAGSRGLVVVTNNLREFERIPGIRIEDWC
tRNA(fMet)-specific endonuclease VapC E 132 Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 , Synthetic Construct MLKFMLDTNTCIFTIKNKPEHIRERFNLNTSRMCISSITLMELIYGAEKSLAPERNLAVVEGFISRLEVLDYDTQAAIHTGQIRAELARKGTPVGPYDQMIAGHAGSRGLVVVTNNLREFERIPGIRIEDWC
tRNA(fMet)-specific endonuclease VapC C 132 Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 , Synthetic Construct MLKFMLDTNTCIFTIKNKPEHIRERFNLNTSRMCISSITLMELIYGAEKSLAPERNLAVVEGFISRLEVLDYDTQAAIHTGQIRAELARKGTPVGPYDQMIAGHAGSRGLVVVTNNLREFERIPGIRIEDWC
tRNA(fMet)-specific endonuclease VapC G 132 Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 , Synthetic Construct MLKFMLDTNTCIFTIKNKPEHIRERFNLNTSRMCISSITLMELIYGAEKSLAPERNLAVVEGFISRLEVLDYDTQAAIHTGQIRAELARKGTPVGPYDQMIAGHAGSRGLVVVTNNLREFERIPGIRIEDWC
Antitoxin VapB B 68 Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 , Synthetic Construct MHTTLFFSNRTQAVRLPKSISFPEDVKHVEIIAVGRSRIITPVGESWDSWFDGEGASTDFMSTREQPA
Antitoxin VapB F 68 Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 , Synthetic Construct MHTTLFFSNRTQAVRLPKSISFPEDVKHVEIIAVGRSRIITPVGESWDSWFDGEGASTDFMSTREQPA
Antitoxin VapB H 68 Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 , Synthetic Construct MHTTLFFSNRTQAVRLPKSISFPEDVKHVEIIAVGRSRIITPVGESWDSWFDGEGASTDFMSTREQPA
Antitoxin VapB D 68 Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 , Synthetic Construct MHTTLFFSNRTQAVRLPKSISFPEDVKHVEIIAVGRSRIITPVGESWDSWFDGEGASTDFMSTREQPA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA forward (27-MER) m 27 NA CCTGTATATCTCTTTGACATATACATC
DNA backward (27-MER) n 27 NA GATGTATATGTCAAAGAGATATACAGG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2018-09-20
Deposition Author(s): Lee, B.J. , Park, D.W.