6HTQ
Stringent response control by a bifunctional rela enzyme in the presence and absence of the ribosome
PDB DOI: 10.2210/pdb6htq/pdb
Classification: RIBOSOME Organism(s): Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168
Deposited: 2018-10-04 Deposition Author(s): Abdelshahid, M. , Wilson, D.N.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 4.5 Å
Stringent response control by a bifunctional rela enzyme in the presence and absence of the ribosome
Abdelshahid, M. , Wilson, D.N.
Primary Citation of Related Structures: 6HTQ
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S rRNA | a | 1533 | NA | GGAGAGUUUGAUCCUGGCUCAGGACGAACGCUGGCGGCGUGCCUAAUACAUGCAAGUCGAGCGGACAGAUGGGAGCUUGCUCCCUGAUGUUAGCGGCGGACGGGUGAGUAACACGUGGGUAACCUGCCUGUAAGACUGGGAUAACUCCGGGAAACCGGGGCUAAUACCGGAUGGUUGUUUGAACCGCAUGGUUCAAACAUAAAAGGUGGCUUCGGCUACCACUUACAGAUGGACCCGCGGCGCAUUAGCUAGUUGGUGAGGUAACGGCUCACCAAGGCGACGAUGCGUAGCCGACCUGAGAGGGUGAUCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUCUUCCGCAAUGGACGAAAGUCUGACGGAGCAACGCCGCGUGAGUGAUGAAGGUUUUCGGAUCGUAAAGCUCUGUUGUUAGGGAAGAACAAGUGCCGUUCGAAUAGGGCGGUACCUUGACGGUACCUAACCAGAAAGCCACGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGUGGCAAGCGUUGUCCGGAAUUAUUGGGCGUAAAGGGCUCGCAGGCGGUUUCUUAAGUCUGAUGUGAAAGCCCCCGGCUCAACCGGGGAGGGUCAUUGGAAACUGGGGAACUUGAGUGCAGAAGAGGAGAGUGGAAUUCCACGUGUAGCGGUGAAAUGCGUAGAGAUGUGGAGGAACACCAGUGGCGAAGGCGACUCUCUGGUCUGUAACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAGUGCUAAGUGUUAGGGGGUUUCCGCCCCUUAGUGCUGCAGCUAACGCAUUAAGCACUCCGCCUGGGGAGUACGGUCGCAAGACUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGGUCUUGACAUCCUCUGACAAUCCUAGAGAUAGGACGUCCCCUUCGGGGGCAGAGUGACAGGUGGUGCAUGGUUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUGAUCUUAGUUGCCAGCAUUCAGUUGGGCACUCUAAGGUGACUGCCGGUGACAAACCGGAGGAAGGUGGGGAUGACGUCAAAUCAUCAUGCCCCUUAUGACCUGGGCUACACACGUGCUACAAUGGACAGAACAAAGGGCAGCGAAACCGCGAGGUUAAGCCAAUCCCACAAAUCUGUUCUCAGUUCGGAUCGCAGUCUGCAACUCGACUGCGUGAAGCUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCACGAGAGUUUGUAACACCCGAAGUCGGUGAGGUAACCUUUUAGGAGCCAGCCGCCGAAGGUGGGACAGAUGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGG |
| A/R-tRNA | u | 76 | NA | GCCCGGAUAGCUCAGUUGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA |
| P-tRNA | v | 87 | NA | GCCGAGGUGGUGGAAUUGGUAGACACGCUACCUUGAGGUGGUAGUGCCCAAUAGGGCUUACGGGUUCAAGUCCCGUCCUCGGUACCA |
| E-tRNA | w | 75 | NA | CCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 30S ribosomal protein S12 | L | 136 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | PTINQLIRKGRVSKVENSKSPALNKGYNSFKKEHTNVSSPQKRGVCTRVGTMTPKKPNSALRKYARVRLTNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVENRAQGRSKYGTKKPKA |
| 30S ribosomal protein S13 | M | 108 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | RIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDIIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRK |
| 30S ribosomal protein S14 | N | 60 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | AKKSMIAKQQRTPKFKVQEYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW |
| 30S ribosomal protein S15 | O | 85 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | TQERKNQLINEFKTHESDTGSPEVQIAILTDSINNLNEHLRTHKKDHHSRRGLLKMVGKRRNLLTYLRNKDVTRYRELINKLGLR |
| 30S ribosomal protein S16 | P | 88 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | AVKIRLKRMGAKKSPFYRIVVADSRSPRDGRFIETVGTYNPVAKPAEVKIDEELALKWLQTGAKPSDTVRNLFSSQGIMEKFHNAKQG |
| 30S ribosomal protein S17 | Q | 84 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | SERNQRKVYQGRVVSDKMDKTITVVVETYKKHTLYGKRVKYSKKFKAHDENNQAKIGDIVKIMETRPLSATKRFRLVEVVEEAV |
| 30S ribosomal protein S18 | R | 64 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | KVCYFTSNGITHIDYKDVDLLKKFVSERGKILPRRVTGTNAKYQRKLTAAIKRARQMALLPYVS |
| 30S ribosomal protein S19 | S | 78 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | SLKKGPFVDGHLMTKIEKLNETDKKQVVKTWSRRSTIFPQFIGHTIAVYDGRKHVPVFISEDMVGHKLGEFAPTRTYK |
| 30S ribosomal protein S20 | T | 83 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | IKSAIKRTKTNNERRVHNATIKSAMRTAIKQVEASVANNEADKAKTALTEAAKRIDKAVKTGLVHKNTAARYKSRLAKKVNGL |
| 30S ribosomal protein S2 | B | 218 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | LLEAGVHFGHQTRRWNPKMKRYIFTERNGIYIIDLQKTVKKVEEAYNFTKNLAAEGGKILFVGTKKQAQDSVKEEAQRSGMYYVNQRWLGGTLTNFETIQKRIKRLKDIEKMQENGTFDVLPKKEVVQLKKELERLEKFLGGIKDMKDLPDALFIIDPRKERIAVAEARKLNIPIIGIVDTNCDPDEIDVVIPANDDAIRAVKLLTSKMADAILEAKQ |
| GTP pyrophosphokinase | X | 341 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | SDMVYVFTPKGDVIELPSGSVPIDFSYRIHSEIGNKTIGAKVNGKMVTLDHKLRTGDIVEILTSKHSYGPSQDWVKLAQTSQAKHKIRQFFKKQRREENVEKGRELVEKEIKNLDFELKDVLTPENIQKVADKFNFSNEEDMYAAVGYNGITALQVANRLTEKERKQRDQEEQEKIVQEVTGEPKPYPQGRKREAGVRVKGIDNLLVRLSKCCNPVPGDDIVGFITKGRGVSVHREDCPNVKTNEAQERLIPVEWEHESQVQKRKEYNVEIEILGYDRRGLLNEVLQAVNETKTNISSVSGKSDRNKVATIHMAIFIQNINHLHKVVERIKQIRDIYSVRR |
| 50S ribosomal protein L30 | Y | 58 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | AKLEITLKRSVIGRPEDQRVTVRTLGLKKTNQTVVHEDNAAIRGMINKVSHLVSVKEQ |
| 50S ribosomal protein L32 | 1 | 54 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | AVPFRRTSKMKKRLRRTHFKLNVPGMTECPSCGEMKLSHRVCKACGSYNGKDIN |
| 50S ribosomal protein L33 1 | 2 | 48 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | MRVNITLACTECGERNYISKKNKRNNPDRVEFKKYCPRDKKSTLHRET |
| 50S ribosomal protein L34 | 3 | 44 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | MKRTFQPNNRKRSKVHGFRSRMSSKNGRLVLARRRRKGRKVLSA |
| 50S ribosomal protein L35 | 4 | 64 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | PKMKTHRGSAKRFKKTGSGKLKRSHAYTSHLFANKSQKQKRKLRKSAVVSAGDFKRIKQMLANI |
| 50S ribosomal protein L36 | 5 | 37 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | MKVRPSVKPICEKCKVIRRKGKVMVICENPKHKQKQG |
| 50S ribosomal protein L31 | Z | 63 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | MKAGIHPNFKKATVKCACGNEFETGSVKEEVRVEICSECHPFYTGRQKFASADGRVDRFNKKY |
| 30S ribosomal protein S3 | C | 206 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | GQKVNPVGLRIGVIRDWESKWYAGKDYADFLHEDLKIREYISKRLSDASVSKVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINILEIKRADLDAQLVADNIARQLENRVSFRRAQKQQIQRTMRAGAQGVKTMVSGRLGGADIARSEYYSEGTVPLHTLRADIDYATSEADTTYGKLGVKVWIYRGEVL |
| 50S ribosomal protein L3 | D | 206 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | TKGILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTAENDGYEAIQLGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGVEMDAYEVGQEVKVEIFSAGEIVDVTGVSKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMGPVDPNRVFKGKLLPGRMGGEQITVQNLEIVKVDAERNLLLIKGNVPGAKKSLITVKSAVK |
| 50S ribosomal protein L4 | E | 205 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | PKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVIDNNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADANEAVALSARNIPGVTVVEANGINVLDVVNHEKLLITKAAVEKVEEVL |
| 50S ribosomal protein L5 | F | 176 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | NRLKEKYNKEIAPALMTKFNYDSVMQVPKIEKIVINMGVGDAVQNAKAIDSAVEELTFIAGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGERMYDFLDKLISVSLPRVRDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVTKVRGMDIVIVTTANTDEEARELLTQVGMPF |
| 50S ribosomal protein L6 | G | 175 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | SRVGKKLLEIPSDVTVTLNDNNTVAVKGPKGELTRTFHPDMEIKVEDNVLTVARPSDQKEHRALHGTTRSLLGNMVEGVSKGFERGLELVGVGYRASKSGNKLVLNVGYSHPVEIVPEEGIEIEVPSQTKVVVKGTDKERVGAIAANIRAVRSPEPYKGKGIRYEGEVVRRKEGK |
| 30S ribosomal protein S8 | H | 131 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | VMTDPIADMLTRIRNANMVRHEKLEIPASKLKREIAEILKREGFIRDVEFVEDSKQGIIRVFLKYGQNNERVITGLKRISKPGLRVYAKSNEVPRVLNGLGIAIISTSQGVLTDKEARAKQAGGEVLAYVW |
| 30S ribosomal protein S9 | I | 125 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | QYYGTGRRKSSVARVRLVPGEGRIVVNNREISEHIPSAALIEDIKQPLTLTETAGTYDVLVNVHGGGLSGQAGAIRHGIARALLEADPEYRTTLKRAGLLTRDARMKERKKYGLKGARRAPQFSK |
| 50S ribosomal protein L13 | J | 142 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | TPMANASTIERKWLVVDAAGKTLGRLSSEVAAILRGKHKPTYTPHVDTGDHVIIINAEKIELTGKKLTDKIYYRHTQHPGGLKSRTALEMRTNYPEKMLELAIKGMLPKGSLGRQMFKKLNVYRGSEHPHEAQKPEVYELRG |
| 50S ribosomal protein L14 | K | 122 | Bacillus Subtilis (Strain 168) , Bacillus Subtilis Subsp. Subtilis Str. 168 | MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVKQATPGGVVKKGEVVKAVIVRTKSGARRSDGSYISFDENACVIIRDDKSPRGTRIFGPVARELRENNFMKIVSLAPEVI |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2018-10-04 Deposition Author(s): Abdelshahid, M. , Wilson, D.N.