6H70
Gi.1 human norovirus protruding domain in complex with nano-62 and 2-fucosyllactose (2fl)
PDB DOI: 10.2210/pdb6h70/pdb
Classification: VIRAL PROTEIN Organism(s): Advenella Mimigardefordensis Dpn7 , Pyrobaculum Ferrireducens
Deposited: 2018-07-30 Deposition Author(s): Hansman, G.S. , Kilic, T.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.83 Å
Gi.1 human norovirus protruding domain in complex with nano-62 and 2-fucosyllactose (2fl)
Primary Citation of Related Structures: 6H70
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Capsid protein VP1 | A | 292 | Advenella Mimigardefordensis Dpn7 , Pyrobaculum Ferrireducens | KTRPFTLPNLPLSSLSNSRAPLPISSIGISPDNVQSVQFQNGRCTLDGRLVGTTPVSLSHVAKIRGTSNGTVINLTELDGTPFHPFEGPAPIGFPDLGGCDWHINMTQFGHSSQTQYDVDTTPDTFVPHLGSIQANGIGSGNYVGVLSWISPPSHPSGSQVDLWKIPNYGSSITEATHLAPSVYPPGFGEVLVFFMSKMPGPGAYNLPCLLPQEYISHLASEQAPTVGEAALLHYVDPDTGRNLGEFKAYPDGFLTCVPNGASSGPQQLPINGVFVFVSWVSRFYQLKPVGT |
| Capsid protein VP1 | B | 292 | Advenella Mimigardefordensis Dpn7 , Pyrobaculum Ferrireducens | KTRPFTLPNLPLSSLSNSRAPLPISSIGISPDNVQSVQFQNGRCTLDGRLVGTTPVSLSHVAKIRGTSNGTVINLTELDGTPFHPFEGPAPIGFPDLGGCDWHINMTQFGHSSQTQYDVDTTPDTFVPHLGSIQANGIGSGNYVGVLSWISPPSHPSGSQVDLWKIPNYGSSITEATHLAPSVYPPGFGEVLVFFMSKMPGPGAYNLPCLLPQEYISHLASEQAPTVGEAALLHYVDPDTGRNLGEFKAYPDGFLTCVPNGASSGPQQLPINGVFVFVSWVSRFYQLKPVGT |
| Nanobody (VHH) Nano-62 | C | 141 | Advenella Mimigardefordensis Dpn7 , Pyrobaculum Ferrireducens | QVQLQESGGGLVMTGGSLRLSCAVSGRTIDVSVMAWFRQAPGKEREFVSGMRWSGMTTYSADSVKDRFTISRDKTKNTVYLQMNSLKPEDTAVYYCAARSRFIVGVPQARDLYDYWGQGTQVTVSSGRYPYDVPDYGSGRA |
| Nanobody (VHH) Nano-62 | D | 141 | Advenella Mimigardefordensis Dpn7 , Pyrobaculum Ferrireducens | QVQLQESGGGLVMTGGSLRLSCAVSGRTIDVSVMAWFRQAPGKEREFVSGMRWSGMTTYSADSVKDRFTISRDKTKNTVYLQMNSLKPEDTAVYYCAARSRFIVGVPQARDLYDYWGQGTQVTVSSGRYPYDVPDYGSGRA |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2018-07-30 Deposition Author(s): Hansman, G.S. , Kilic, T.