6GB7
Structure of h-2db with scoop loop from tapasin
PDB DOI: 10.2210/pdb6gb7/pdb
Classification: IMMUNE SYSTEM Organism(s): Mus Musculus , Synthetic Construct
Deposited: 2018-04-13 Deposition Author(s): Achour, A. , Hafstrand, I. , Sandalova, T.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.15 Å
Structure of h-2db with scoop loop from tapasin
Achour, A. , Hafstrand, I. , Sandalova, T.
Primary Citation of Related Structures: 6GB7
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| H-2 class I histocompatibility antigen, D-B alpha chain | A | 338 | Mus Musculus , Synthetic Construct | GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPPSTDSYMVIVAVLGVLGAMAIIGAVVAFVMKRRRNTGGKGGDYALAPGSQSSEMSLRDCKA |
| H-2 class I histocompatibility antigen, D-B alpha chain | C | 338 | Mus Musculus , Synthetic Construct | GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPPSTDSYMVIVAVLGVLGAMAIIGAVVAFVMKRRRNTGGKGGDYALAPGSQSSEMSLRDCKA |
| H-2 class I histocompatibility antigen, D-B alpha chain | E | 338 | Mus Musculus , Synthetic Construct | GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPPSTDSYMVIVAVLGVLGAMAIIGAVVAFVMKRRRNTGGKGGDYALAPGSQSSEMSLRDCKA |
| H-2 class I histocompatibility antigen, D-B alpha chain | G | 338 | Mus Musculus , Synthetic Construct | GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEPPPSTDSYMVIVAVLGVLGAMAIIGAVVAFVMKRRRNTGGKGGDYALAPGSQSSEMSLRDCKA |
| Beta-2-microglobulin | B | 100 | Mus Musculus , Synthetic Construct | GIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMAEPKTVYWDRDM |
| Beta-2-microglobulin | D | 100 | Mus Musculus , Synthetic Construct | GIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMAEPKTVYWDRDM |
| Beta-2-microglobulin | H | 100 | Mus Musculus , Synthetic Construct | GIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMAEPKTVYWDRDM |
| Beta-2-microglobulin | F | 99 | Mus Musculus , Synthetic Construct | IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMAEPKTVYWDRDM |
| PHE-ALA-PRO-GLY-ASN-TYR-PRO | I | 7 | Mus Musculus , Synthetic Construct | FAPGNYP |
| PHE-ALA-PRO-GLY-ASN-TYR-PRO | J | 7 | Mus Musculus , Synthetic Construct | FAPGNYP |
| PHE-ALA-PRO-GLY-ASN-TYR-PRO | K | 7 | Mus Musculus , Synthetic Construct | FAPGNYP |
| PHE-ALA-PRO-GLY-ASN-TYR-PRO | L | 7 | Mus Musculus , Synthetic Construct | FAPGNYP |
| GLY-GLY-LEU-SER | P | 10 | Mus Musculus , Synthetic Construct | EDAGGGGLSK |
| GLY-GLY-LEU-SER | R | 10 | Mus Musculus , Synthetic Construct | EDAGGGGLSK |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2018-04-13 Deposition Author(s): Achour, A. , Hafstrand, I. , Sandalova, T.