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6DZI

Cryo-em structure of mycobacterium smegmatis 70s c(minus) ribosome 70s-mpy complex

PDB DOI: 10.2210/pdb6dzi/pdb

Classification: RIBOSOME
Organism(s): Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum

Deposited: 2018-07-05
Deposition Author(s): Agrawal, R.K. , Derbyshire, K.M. , Gray, A.G. , Kaushal, P.S. , Korripella, R. , Li, Y. , Lin, Q. , Ojha, A. , Sharma, M.R. , Wade, J.T. , Yang, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.46 Å

Literature

Cryo-em structure of mycobacterium smegmatis 70s c(minus) ribosome 70s-mpy complex

Agrawal, R.K. , Derbyshire, K.M. , Gray, A.G. , Kaushal, P.S. , Korripella, R. , Li, Y. , Lin, Q. , Ojha, A. , Sharma, M.R. , Wade, J.T. , Yang, Y.

Primary Citation of Related Structures: 6DZI


Proteins
Molecule Chains Sequence Length Organism Sequence
50S ribosomal protein L9 H 151 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MKLILTAEVEHLGAAGDTVEVKDGYGRNYLLPRGLAIVASRGAERQAEEIRRARESKVIRDIEHANELKTALEGLGDVTLSVNAAGDTGKLFGSVTAADVVNAIKKAGGPNLDKRTVQLAKAHIKSVGTHPVTVKLHTGVEAKVSLNVVAQ
50S ribosomal protein L21 S 100 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum TYAIVKTGGKQYKVAAGDVVKVEKLDSEPGASVSLPVALVVDGANVTSKADDLAKVAVTAEVLEHTKGPKIRIHKFKNKTGYHKRQGHRQQLTVLKVTGI
50S ribosomal protein L22 T 114 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum EFPSATAKARYVRVSATKARRVIDLVRGKSVEEALDILRWAPQAASEPVAKVIASAAANAQNNEGLDPSTLVVATVYADEGPTAKRIRPRAQGRAFRIRKRTSHITVIVESRPP
50S ribosomal protein L23 U 97 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum ATITDPRDIILAPVISEKSYGLIEDNVYTFVVHPDSNKTQIKIAIEKIFDVKVDSVNTANRQGKRKRTRTGFGKRKSTKRAIVKLAAGSKPIDLFGA
50S ribosomal protein L24 V 105 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSANERGASSGGIVTQEAPIHVSNVMVVDSDGKPTRVGYRIDDETGKKVRIAKTNGKDI
50S ribosomal protein L27 X 79 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum SSSRNGRDSAAQRLGVKRFGGQVVKAGEILVRQRGTHFHPGVNVGRGGDDTLFALAPGAVEFGAKRGRKTVNIVPVARP
50S ribosomal protein L29 Z 64 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum GTTPGELRELTDDELKDKLRESKEELFNLRFQMATGQLSNNRRLRTVRQEIARVYTVLRERELG
30S ribosomal protein S17 5 94 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum QKGPKYTPAAEKPRGRRKTAIGYVVSDKMQKTIVVELEDRKSHPLYGKIIRTTKKVKAHDENGEAGIGDRVSLMETRPLSATKRWRLVEILEKA
30S ribosomal protein S19 6 82 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum PRSLKKGPFVDDHLLKKVDVQNEKNTKQVIKTWSRRSTIIPDFIGHTFAVHDGRKHVPVFVTEAMVGHKLGEFAPTRTFKGH
30S ribosomal protein S20 7 85 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum ANIKSQIKRIRTNERRRLRNQSVKSSLRTAIRGFREAVDAGDKDKASELLHATSRKLDKAASKGVIHPNQAANKKSALALALNKL
30S ribosomal protein S2 8 228 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MAVVTMKQLLDSGAHFGHQTRRWNPKMKRFIFTDRNGIYIIDLQQTLTYIDKAYEFVKETVAHGGTVLFVGTKKQAQESIAEEATRVGMPYVNQRWLGGMLTNFSTVHKRLQRLKELEAMEQTGGFEGRTKKEILMLTREKNKLERSLGGIRDMQKVPSAVWVVDTNKEHIAVGEARKLGIPVIAILDTNCDPDVVDYPIPGNDDAIRSAALLTKVIASAVAEGLQAR
50S ribosomal protein L11 J 133 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum LIKLQIQAGQANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGNVIPVEITVYEDRSFTFALKTPPAAKLLLKAAGVQKGSGEPHKTKVAKVTWDQVREIAETKKADLNANDIDAAAKIIAGTARSMGITVE
50S ribosomal protein L20 R 124 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum ARVKRALNAQKKRRTVLKASKGYRGQRSRLYRKAKEQQLHSLTYAYRDRRARKGEFRKLWISRINAAARANDITYNRLIQGLKAAGVEVDRKNLAELAVSDPAAFTALVDVARAALPEDVNAPS
50S ribosomal protein L28 Y 77 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum SAHCQVTGRGPGFGNSVSHSHRRTPRRWDPNIQNKTYYLPSEGRRIRLRVSAKGIKVIDRDGIEAVVARMRARGEKY
30S ribosomal protein S14 9 100 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum AKKSKIVKNEQRRELVQRYAERRAELKRTIRDPASSPERRAAAVSALQRLPRDSSPVRLRNRDVVDGRPRGHLRKFGLSRVRVREMAHRGELPGVRKASW
50S ribosomal protein L30 A 59 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum AELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEVG
50S ribosomal protein L32 B 54 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum AVPKRRMSRANTRSRRAQWKAEAPGLVTVSVAGQQRKVPRRLLKAARLGLVDLD
50S ribosomal protein L33 2 C 53 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum ARNEIRPIVKLRSTAGTGYTYVTRKNRRNDPDRIVLRKYDPVLRRHVEFREER
50S ribosomal protein L34 D 46 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum AKGKRTFQPNNRRRARVHGFRLRMRTRAGRAIVANRRSKGRRALTA
50S ribosomal protein L35 E 63 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum PKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPTKRTRRLDGRTTVSAADNSRINKLLNG
50S ribosomal protein L36 F 37 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MKVNPSVKPICDKCRVIRRHGRVMVICSDPRHKQRQG
50S ribosomal protein L31 G 82 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MKPGIHPDYHPVVFQDAATGAQFLTRSTATSTRTIEWPTPSGPKTYPLIVVDVTSDSHPFWTGSARHIDSAGQVEKFRRRYG
50S ribosomal protein L13 K 146 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum PTYTPKAGDTTRSWYVIDASDVVLGRLASAAATLLRGKHKPTFTPNVDGGDFVIVINADKIAVSGDKLTKKFAYRHSGYPGGLRKRTIGELLEKHPTRVVENAIIGMLPHNKLGRQIQKKLKVYAGPDHPHAAQQPIPFEIKQVAQ
50S ribosomal protein L10 I 126 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MAKADKATAVADIAEQFKASTATVVTEYRGLTVANLAELRRALGDSATYTVAKNTLVKRAASEAGIEGLDELFAGPTAIAFVKGEAVDAAKAIKKFAKDNKALVIKGGYMDGKALSVADVEKIADL
30S ribosomal protein S4 L 200 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum ARYTGPATRKSRRLGVDLVGGDQSFEKRPYPPGQHGRARIKESEYRQQLQEKQKARFSYGVMEKQFRRYYEEANRQPGKTGDNLLRILESRLDNVVYRAGLARTRRMARQLVSHGHFLVNGVKVDIPSYRVSQYDIIDVKEKSLNTLPFQIARETAGERPIPSWLQVVGERQRILVHQLPERAQIDVPLTEQLIVELYSK
30S ribosomal protein S5 M 180 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum NYIERVVSINRVSKVVKGGRRFSFTALVIVGDGKGMVGVGYGKAKEVPAAIAKGVEEARKNFFRVPLIGSTITHPVQGEAAAGVVMLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPIEDVAPAGMLKARRESEALAAAAAREGSA
30S ribosomal protein S6 N 96 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum MRPYEIMVILDPTLDERTVAPSLETFLNVIRKDGGTVDKVDIWGRRRLAYEIAKHAEGIYAVIDVKAEPATVSELDRQLNLNESVLRTKVLRTDKH
50S ribosomal protein L17 O 118 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum PKPTKGPRLGGSSSHQSALLANLATSLFEHGRIKTTEPKARALRPYAEKLITHAKKGALHNRREVMKKIRDKDVVHTLFAEIGPFYADRNGGYTRIIKVENRKGDNAPMAVIELVREK
30S ribosomal protein S7 P 155 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum PRKGPAPKRPLVNDPVYGSQLVTQLVNKVLLEGKKSLAERIVYGALEQAREKTGTDPVVTLKRALDNVKPALEVRSRRVGGATYQVPVEVRPDRSTTLALRWLVNFSRQRREKTMVERLANEILDASNGLGASVKRREDTHKMAEANRAFAHYRW
30S ribosomal protein S8 Q 131 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum TMTDPIADFLTRLRNANSAYHDEVTLPHSKLKANIAEILKREGYISDYRTEDARVGKSLVVQLKYGPSRERSIAGLRRVSKPGLRVYAKSTNLPRVLGGLGVAIISTSSGLLTDRQAARQGVGGEVLAYVW
50S ribosomal protein L25 W 192 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum TANIPNKLTANVRTRTGKGASRQARRDGKVPAVLYGHGTDPQHLELNARDFAAVLRSHGTNAILTLDIEGTEQLALTKALDVHPIRRNIQHADLLVVQRGEKVTVEVTVLVEGDATPGTLVTQDANTIEIEAEALSIPEQLTVSVEGVEAGTQITAGQISLPEGVNLISDPELLVVNVVEAPSAEALEEEGA
Uncharacterized protein 3 23 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum AKRGRKKRDRKHSKANHGKRPNA
30S ribosomal protein S9 4 126 Bovine Enterovirus (Strain Vg-5-27) , Leptospira Kmetyi Serovar Malaysia Str. Bejo-Iso9 , Trichoderma Harzianum PIQTVGRRKEAVVRVRLVPGTGQFNLDGRTLENYFPNKVHQQLIKAPLVTVDRVDQFDIYAHLDGGGPSGQAGALRLAIARALILVQPEDRPALKKAGFLTRDPRAIERKKYGLKKARKAPQYSKR
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-07-05
Deposition Author(s): Agrawal, R.K. , Derbyshire, K.M. , Gray, A.G. , Kaushal, P.S. , Korripella, R. , Li, Y. , Lin, Q. , Ojha, A. , Sharma, M.R. , Wade, J.T. , Yang, Y.