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6DZI
Cryo-em structure of mycobacterium smegmatis 70s c(minus) ribosome 70s-mpy complex
PDB DOI: 10.2210/pdb6dzi/pdb
Classification: RIBOSOME Organism(s): Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155
Deposited: 2018-07-05 Deposition Author(s): Agrawal, R.K. , Derbyshire, K.M. , Gray, A.G. , Kaushal, P.S. , Korripella, R. , Li, Y. , Lin, Q. , Ojha, A. , Sharma, M.R. , Wade, J.T. , Yang, Y.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.46 Å
Cryo-em structure of mycobacterium smegmatis 70s c(minus) ribosome 70s-mpy complex
Agrawal, R.K. , Derbyshire, K.M. , Gray, A.G. , Kaushal, P.S. , Korripella, R. , Li, Y. , Lin, Q. , Ojha, A. , Sharma, M.R. , Wade, J.T. , Yang, Y.
Primary Citation of Related Structures: 6DZI
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L9 | H | 151 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MKLILTAEVEHLGAAGDTVEVKDGYGRNYLLPRGLAIVASRGAERQAEEIRRARESKVIRDIEHANELKTALEGLGDVTLSVNAAGDTGKLFGSVTAADVVNAIKKAGGPNLDKRTVQLAKAHIKSVGTHPVTVKLHTGVEAKVSLNVVAQ |
| 50S ribosomal protein L21 | S | 100 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | TYAIVKTGGKQYKVAAGDVVKVEKLDSEPGASVSLPVALVVDGANVTSKADDLAKVAVTAEVLEHTKGPKIRIHKFKNKTGYHKRQGHRQQLTVLKVTGI |
| 50S ribosomal protein L22 | T | 114 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | EFPSATAKARYVRVSATKARRVIDLVRGKSVEEALDILRWAPQAASEPVAKVIASAAANAQNNEGLDPSTLVVATVYADEGPTAKRIRPRAQGRAFRIRKRTSHITVIVESRPP |
| 50S ribosomal protein L23 | U | 97 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | ATITDPRDIILAPVISEKSYGLIEDNVYTFVVHPDSNKTQIKIAIEKIFDVKVDSVNTANRQGKRKRTRTGFGKRKSTKRAIVKLAAGSKPIDLFGA |
| 50S ribosomal protein L24 | V | 105 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSANERGASSGGIVTQEAPIHVSNVMVVDSDGKPTRVGYRIDDETGKKVRIAKTNGKDI |
| 50S ribosomal protein L27 | X | 79 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | SSSRNGRDSAAQRLGVKRFGGQVVKAGEILVRQRGTHFHPGVNVGRGGDDTLFALAPGAVEFGAKRGRKTVNIVPVARP |
| 50S ribosomal protein L29 | Z | 64 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | GTTPGELRELTDDELKDKLRESKEELFNLRFQMATGQLSNNRRLRTVRQEIARVYTVLRERELG |
| 30S ribosomal protein S17 | 5 | 94 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | QKGPKYTPAAEKPRGRRKTAIGYVVSDKMQKTIVVELEDRKSHPLYGKIIRTTKKVKAHDENGEAGIGDRVSLMETRPLSATKRWRLVEILEKA |
| 30S ribosomal protein S19 | 6 | 82 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | PRSLKKGPFVDDHLLKKVDVQNEKNTKQVIKTWSRRSTIIPDFIGHTFAVHDGRKHVPVFVTEAMVGHKLGEFAPTRTFKGH |
| 30S ribosomal protein S20 | 7 | 85 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | ANIKSQIKRIRTNERRRLRNQSVKSSLRTAIRGFREAVDAGDKDKASELLHATSRKLDKAASKGVIHPNQAANKKSALALALNKL |
| 30S ribosomal protein S2 | 8 | 228 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MAVVTMKQLLDSGAHFGHQTRRWNPKMKRFIFTDRNGIYIIDLQQTLTYIDKAYEFVKETVAHGGTVLFVGTKKQAQESIAEEATRVGMPYVNQRWLGGMLTNFSTVHKRLQRLKELEAMEQTGGFEGRTKKEILMLTREKNKLERSLGGIRDMQKVPSAVWVVDTNKEHIAVGEARKLGIPVIAILDTNCDPDVVDYPIPGNDDAIRSAALLTKVIASAVAEGLQAR |
| 50S ribosomal protein L11 | J | 133 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | LIKLQIQAGQANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGNVIPVEITVYEDRSFTFALKTPPAAKLLLKAAGVQKGSGEPHKTKVAKVTWDQVREIAETKKADLNANDIDAAAKIIAGTARSMGITVE |
| 50S ribosomal protein L20 | R | 124 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | ARVKRALNAQKKRRTVLKASKGYRGQRSRLYRKAKEQQLHSLTYAYRDRRARKGEFRKLWISRINAAARANDITYNRLIQGLKAAGVEVDRKNLAELAVSDPAAFTALVDVARAALPEDVNAPS |
| 50S ribosomal protein L28 | Y | 77 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | SAHCQVTGRGPGFGNSVSHSHRRTPRRWDPNIQNKTYYLPSEGRRIRLRVSAKGIKVIDRDGIEAVVARMRARGEKY |
| 30S ribosomal protein S14 | 9 | 100 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | AKKSKIVKNEQRRELVQRYAERRAELKRTIRDPASSPERRAAAVSALQRLPRDSSPVRLRNRDVVDGRPRGHLRKFGLSRVRVREMAHRGELPGVRKASW |
| 50S ribosomal protein L30 | A | 59 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | AELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEVG |
| 50S ribosomal protein L32 | B | 54 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | AVPKRRMSRANTRSRRAQWKAEAPGLVTVSVAGQQRKVPRRLLKAARLGLVDLD |
| 50S ribosomal protein L33 2 | C | 53 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | ARNEIRPIVKLRSTAGTGYTYVTRKNRRNDPDRIVLRKYDPVLRRHVEFREER |
| 50S ribosomal protein L34 | D | 46 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | AKGKRTFQPNNRRRARVHGFRLRMRTRAGRAIVANRRSKGRRALTA |
| 50S ribosomal protein L35 | E | 63 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | PKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPTKRTRRLDGRTTVSAADNSRINKLLNG |
| 50S ribosomal protein L36 | F | 37 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MKVNPSVKPICDKCRVIRRHGRVMVICSDPRHKQRQG |
| 50S ribosomal protein L31 | G | 82 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MKPGIHPDYHPVVFQDAATGAQFLTRSTATSTRTIEWPTPSGPKTYPLIVVDVTSDSHPFWTGSARHIDSAGQVEKFRRRYG |
| 50S ribosomal protein L13 | K | 146 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | PTYTPKAGDTTRSWYVIDASDVVLGRLASAAATLLRGKHKPTFTPNVDGGDFVIVINADKIAVSGDKLTKKFAYRHSGYPGGLRKRTIGELLEKHPTRVVENAIIGMLPHNKLGRQIQKKLKVYAGPDHPHAAQQPIPFEIKQVAQ |
| 50S ribosomal protein L10 | I | 126 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MAKADKATAVADIAEQFKASTATVVTEYRGLTVANLAELRRALGDSATYTVAKNTLVKRAASEAGIEGLDELFAGPTAIAFVKGEAVDAAKAIKKFAKDNKALVIKGGYMDGKALSVADVEKIADL |
| 30S ribosomal protein S4 | L | 200 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | ARYTGPATRKSRRLGVDLVGGDQSFEKRPYPPGQHGRARIKESEYRQQLQEKQKARFSYGVMEKQFRRYYEEANRQPGKTGDNLLRILESRLDNVVYRAGLARTRRMARQLVSHGHFLVNGVKVDIPSYRVSQYDIIDVKEKSLNTLPFQIARETAGERPIPSWLQVVGERQRILVHQLPERAQIDVPLTEQLIVELYSK |
| 30S ribosomal protein S5 | M | 180 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | NYIERVVSINRVSKVVKGGRRFSFTALVIVGDGKGMVGVGYGKAKEVPAAIAKGVEEARKNFFRVPLIGSTITHPVQGEAAAGVVMLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPIEDVAPAGMLKARRESEALAAAAAREGSA |
| 30S ribosomal protein S6 | N | 96 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | MRPYEIMVILDPTLDERTVAPSLETFLNVIRKDGGTVDKVDIWGRRRLAYEIAKHAEGIYAVIDVKAEPATVSELDRQLNLNESVLRTKVLRTDKH |
| 50S ribosomal protein L17 | O | 118 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | PKPTKGPRLGGSSSHQSALLANLATSLFEHGRIKTTEPKARALRPYAEKLITHAKKGALHNRREVMKKIRDKDVVHTLFAEIGPFYADRNGGYTRIIKVENRKGDNAPMAVIELVREK |
| 30S ribosomal protein S7 | P | 155 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | PRKGPAPKRPLVNDPVYGSQLVTQLVNKVLLEGKKSLAERIVYGALEQAREKTGTDPVVTLKRALDNVKPALEVRSRRVGGATYQVPVEVRPDRSTTLALRWLVNFSRQRREKTMVERLANEILDASNGLGASVKRREDTHKMAEANRAFAHYRW |
| 30S ribosomal protein S8 | Q | 131 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | TMTDPIADFLTRLRNANSAYHDEVTLPHSKLKANIAEILKREGYISDYRTEDARVGKSLVVQLKYGPSRERSIAGLRRVSKPGLRVYAKSTNLPRVLGGLGVAIISTSSGLLTDRQAARQGVGGEVLAYVW |
| 50S ribosomal protein L25 | W | 192 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | TANIPNKLTANVRTRTGKGASRQARRDGKVPAVLYGHGTDPQHLELNARDFAAVLRSHGTNAILTLDIEGTEQLALTKALDVHPIRRNIQHADLLVVQRGEKVTVEVTVLVEGDATPGTLVTQDANTIEIEAEALSIPEQLTVSVEGVEAGTQITAGQISLPEGVNLISDPELLVVNVVEAPSAEALEEEGA |
| Uncharacterized protein | 3 | 23 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | AKRGRKKRDRKHSKANHGKRPNA |
| 30S ribosomal protein S9 | 4 | 126 | Mycobacterium Smegmatis , Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Str. Mc2 155 | PIQTVGRRKEAVVRVRLVPGTGQFNLDGRTLENYFPNKVHQQLIKAPLVTVDRVDQFDIYAHLDGGGPSGQAGALRLAIARALILVQPEDRPALKKAGFLTRDPRAIERKKYGLKKARKAPQYSKR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2018-07-05 Deposition Author(s): Agrawal, R.K. , Derbyshire, K.M. , Gray, A.G. , Kaushal, P.S. , Korripella, R. , Li, Y. , Lin, Q. , Ojha, A. , Sharma, M.R. , Wade, J.T. , Yang, Y.