6DHF
Rt xfel structure of the one-flash state of photosystem ii (1f, s2-rich) at 2.08 angstrom resolution
PDB DOI: 10.2210/pdb6dhf/pdb
Classification: PHOTOSYNTHESIS Organism(s): Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1)
Deposited: 2018-05-20 Deposition Author(s): Adams, P.D. , Aller, P. , Alonso-Mori, R. , Batyuk, A. , Bergmann, U. , Boutet, S. , Brewster, A.S. , Butryn, A. , Carbajo, S. , Chatterjee, R. , Cheah, M.H. , De Lichtenberg, C. , Dobbek, H. , Douthit, L. , Fransson, T. , Fuller, F.D. , Gul, S. , Holton, J.M. , Hussein, R. , Ibrahim, M. , Kern, J. , Koglin, J.E. , Kroll, T. , Lassalle, L. , Liang, M. , Messinger, J. , Moriarty, N.W. , Orville, A.M. , Pastor, E. , Sauter, N.K. , Seufert, I. , Shevela, D. , Sierra, R.G. , Sokaras, D. , Weninger, C. , Wersig, J. , Yachandra, V.K. , Yano, J. , Young, I.D. , Zhang, M. , Zouni, A.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.08 Å
Rt xfel structure of the one-flash state of photosystem ii (1f, s2-rich) at 2.08 angstrom resolution
Adams, P.D. , Aller, P. , Alonso-Mori, R. , Batyuk, A. , Bergmann, U. , Boutet, S. , Brewster, A.S. , Butryn, A. , Carbajo, S. , Chatterjee, R. , Cheah, M.H. , De Lichtenberg, C. , Dobbek, H. , Douthit, L. , Fransson, T. , Fuller, F.D. , Gul, S. , Holton, J.M. , Hussein, R. , Ibrahim, M. , Kern, J. , Koglin, J.E. , Kroll, T. , Lassalle, L. , Liang, M. , Messinger, J. , Moriarty, N.W. , Orville, A.M. , Pastor, E. , Sauter, N.K. , Seufert, I. , Shevela, D. , Sierra, R.G. , Sokaras, D. , Weninger, C. , Wersig, J. , Yachandra, V.K. , Yano, J. , Young, I.D. , Zhang, M. , Zouni, A.
Primary Citation of Related Structures: 6DHF
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 1 | A | 334 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | ANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEVMHERNAHNFPLDLA |
| Photosystem II reaction center protein K | K | 37 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | KLPEAYAIFDPLVDVLPVIPVLFLALAFVWQAAVGFR |
| Photosystem II reaction center protein L | L | 37 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MEPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN |
| Photosystem II reaction center protein M | M | 33 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MEVNQLGLIATALFVLVPSVFLIILYVQTESQQ |
| Photosystem II manganese-stabilizing polypeptide | O | 244 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA |
| Photosystem II reaction center protein T | T | 30 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | METITYVFIFACIIALFFFAIFFREPPRIT |
| Photosystem II 12 kDa extrinsic protein | U | 97 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | ELVNVVDEKLGTAYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTEVETALVEGGDRYNNGLYK |
| Cytochrome c-550 | V | 137 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | AELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKWGGGKVYY |
| Photosystem II reaction center protein Ycf12 | Y | 30 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | EVIAQLTMIAMIGIAGPMIIFLLAVRRGNL |
| Photosystem II reaction center X protein | X | 38 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | TITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQR |
| Photosystem II reaction center protein Z | Z | 62 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVLVVGVLNFFVV |
| Photosystem II CP47 reaction center protein | B | 505 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSGIDPELSPEQVEWGFYQKVGDVTTRR |
| Photosystem II protein Y | R | 34 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | DWRVLVVLLPVLLAAGWAVRNILPYAVKQVQKLL |
| Photosystem II CP43 reaction center protein | C | 451 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | ATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRESEPVLSMPSLD |
| Photosystem II D2 protein | D | 341 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | RGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 82 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | GTTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQLK |
| Cytochrome b559 subunit beta | F | 34 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | SYPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR |
| Photosystem II reaction center protein H | H | 65 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | ARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKALG |
| Photosystem II reaction center protein I | I | 36 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | METLKITVYIVVTFFVLLFVFGFLSGDPARNPKRKD |
| Photosystem II reaction center protein J | J | 36 | Thermosynechococcus Elongatus , Thermosynechococcus Elongatus (Strain Bp-1) | GGRIPLWIVATVAGMGVIVIVGLFFYGAYAGLGSSL |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2018-05-20 Deposition Author(s): Adams, P.D. , Aller, P. , Alonso-Mori, R. , Batyuk, A. , Bergmann, U. , Boutet, S. , Brewster, A.S. , Butryn, A. , Carbajo, S. , Chatterjee, R. , Cheah, M.H. , De Lichtenberg, C. , Dobbek, H. , Douthit, L. , Fransson, T. , Fuller, F.D. , Gul, S. , Holton, J.M. , Hussein, R. , Ibrahim, M. , Kern, J. , Koglin, J.E. , Kroll, T. , Lassalle, L. , Liang, M. , Messinger, J. , Moriarty, N.W. , Orville, A.M. , Pastor, E. , Sauter, N.K. , Seufert, I. , Shevela, D. , Sierra, R.G. , Sokaras, D. , Weninger, C. , Wersig, J. , Yachandra, V.K. , Yano, J. , Young, I.D. , Zhang, M. , Zouni, A.