PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6DB9

Structural basis for promiscuous binding and activation of fluorogenic dyes by dir2s rna aptamer

PDB DOI: 10.2210/pdb6db9/pdb

Classification: RNA/Immune System
Organism(s): Synthetic Construct , Synthetic Construct

Deposited: 2018-05-02
Deposition Author(s): Laski, A. , Piccirilli, J.A. , Shao, Y. , Shelke, S.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.025 Å

6db9
Literature

Structural basis for promiscuous binding and activation of fluorogenic dyes by dir2s rna aptamer

Laski, A. , Piccirilli, J.A. , Shao, Y. , Shelke, S.A.

Primary Citation of Related Structures: 6DB9


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (60-MER) r 60 NA GGAUGCGCCUUGAAAAGCCUGCGAAACACGCAGCUGGUGAAUGACAGCUAUGGCGCAUCC

Proteins
Molecule Chains Sequence Length Organism Sequence
Fab-Heavy-Chain H 232 Synthetic Construct , Synthetic Construct EISEVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTH
Fab-Light-Chain L 214 Synthetic Construct , Synthetic Construct SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPSTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGSSPVTKSFNRGEC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2018-05-02
Deposition Author(s): Laski, A. , Piccirilli, J.A. , Shao, Y. , Shelke, S.A.