6DB8
Structural basis for promiscuous binding and activation of fluorogenic dyes by dir2s rna aptamer
PDB DOI: 10.2210/pdb6db8/pdb
Classification: RNA/IMMUNE SYSTEM Organism(s): Fremyella Diplosiphon , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2018-05-02 Deposition Author(s): Laski, A. , Piccirilli, J.A. , Shao, Y. , Shelke, S.A.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.86541 Å
Structural basis for promiscuous binding and activation of fluorogenic dyes by dir2s rna aptamer
Laski, A. , Piccirilli, J.A. , Shao, Y. , Shelke, S.A.
Primary Citation of Related Structures: 6DB8
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Fab-Heavy chain | H | 232 | Fremyella Diplosiphon , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | EISEVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTH |
| Fab-Light chain | L | 212 | Fremyella Diplosiphon , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPSTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA (60-MER) | r | 60 | NA | GGAUGCGCCUUGAAAAGCCUGCGAAACACGCAGCUGGUGAAUGACAGCUAUGGCGCAUCC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2018-05-02 Deposition Author(s): Laski, A. , Piccirilli, J.A. , Shao, Y. , Shelke, S.A.