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6DB8

Structural basis for promiscuous binding and activation of fluorogenic dyes by dir2s rna aptamer

PDB DOI: 10.2210/pdb6db8/pdb

Classification: RNA/IMMUNE SYSTEM
Organism(s): Synthetic Construct , Synthetic Construct

Deposited: 2018-05-02
Deposition Author(s): Laski, A. , Piccirilli, J.A. , Shao, Y. , Shelke, S.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.86541 Å

6db8
Literature

Structural basis for promiscuous binding and activation of fluorogenic dyes by dir2s rna aptamer

Laski, A. , Piccirilli, J.A. , Shao, Y. , Shelke, S.A.

Primary Citation of Related Structures: 6DB8


Proteins
Molecule Chains Sequence Length Organism Sequence
Fab-Heavy chain H 232 Synthetic Construct , Synthetic Construct EISEVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTH
Fab-Light chain L 212 Synthetic Construct , Synthetic Construct DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPSTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (60-MER) r 60 NA GGAUGCGCCUUGAAAAGCCUGCGAAACACGCAGCUGGUGAAUGACAGCUAUGGCGCAUCC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2018-05-02
Deposition Author(s): Laski, A. , Piccirilli, J.A. , Shao, Y. , Shelke, S.A.