6BY7
Folding dna into a lipid-conjugated nano-barrel for controlled reconstitution of membrane proteins
PDB DOI: 10.2210/pdb6by7/pdb
Classification: DNA Organism(s): N.A.
Deposited: 2017-12-20 Deposition Author(s): Chen, S. , Dong, Y. , Liu, D. , Mao, Y. , Sodroski, J. , Yang, Z. , Zhang, S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 7.5 Å
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (47-MER) | 1a | 47 | NA | ATAAGTGCTAGAAAATTTTATTTTGTCACAATCAATAAAAAAAACAG |
| DNA (32-MER) | 1j | 32 | NA | CGAAAGACATCACCAGCATTTGGGAATTAGAG |
| DNA (4346-MER) | 3n | 4346 | NA | TGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAACACTCAAAAATATCTCGGGCTATTCTTTTGATTTATAAGGGATTTTGCCGATTTCGGAACCACCATCAAACAGGATTTTCGCCTGCTGGGGCAAACCAGCGTGGACCGCTTGCTGCAACTCTCTCAGGGCCAGGCGGTGAAGGGCAATCAGCTGTTGCCCGTCTCACTGGTGAAAAGAAAAACCACCCTGGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGATTACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGCGCTTTGCCTGGTTTCCGGCACCAGAAGCGGTGCCGGAAAGCTGGCTGGAGTGCGATCTTCCTGAGGCCGATACTGTCGTCGTCCCCTCAAACTGGCAGATGCACGGTTACGATGCGCCCATCTACACCAACGTGACCTATCCCATTACGGTCGTTTGTTCCCACGGAGAATCCGACGGGTTGTTACTCGCTCACATTTAATGTTGATGAAAGCTGGCTACAGGAAGGCCAGACGCGAATTATTTTTGATGGCGTTCCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTTAATGCGAATTTTAACAAAATATTAACGTTTACAATTTAAATATTTGCTTATACAATCTTCCTGTTTTTGGGGCTTTTCTGATTATCAACCGGGGTACAACATGCTAGTTTTACGATTACCGTTCATCGATTCTCTTGTTTGCTCCAGACTCTCAGGCAATGACCTGATAGCCTTTGTAGATCTCTCAAAAATAGCTACCCTCTCCGGCATTAATTTATCAGCTAGAACGGTTGAATATCATATTGATGGTGATTTGACTGTCTCCGGCCTTTCTCACCCTTTTGAATCTTTACCTACACATTACTCAGGCATTGCATTTAAAATATATGAGGGTTCTAAAAATTTTTATCCTTGCGTTGAAATAAAGGCTTCTCCCGCAAAAGTATTACAGGGTCATAATGTTTAAAGTACAACCGATTTAGCTTTATGCTCTGAGGCTTTATTGCTTAATTTTGCTAATTCTTTGCCTTGCCTGTATGATTTATTGGATGTTAATGCTACTACTATTAGTAGAATTGATGCCACCTTTTCAGCTCGCGCCCCAAATGAAAATATAGCTAAACAAAATATTGACCATTTGCGAAATGTATCTAATGGTCAAACTAAATCTACTCGTTCGCAGAATTGGGAATCAACTGTTATATGGAATGAAACTTCCAGACACCGTACTTTAGTTGCATATTTAAAACATGTTGAGCTACAGCATTATATTCAGCAATTAAGCAAAAAGCCATCCGCAAAAATGACCTCTTATCAAAAGGAGCAATTAAAGGTACTCTCTAATCCTGACCTGTTGGAGTTTGCTTCCGGTCTGGTTCGCTTTGAAGCTCGAATTAAAACGCGATATTTGAAGTCTTTCGGGCTTCCTCTTAATCTTTTTGATGCAATCCGCTTTGCTTCTGACTATAATAGTCAGGGTAAAGACCTGATTTTTGATTTATGGTCATTCTCGTTTTCTGAACTGTTTAAAAAATTTGAGGGGGATTCAATGAATATTTATGACGATTCCGCAGTATTGGACGCTATCCAGTCTAAACATTTTACTATTACCCCCTCTGGCAAAACTTCTTTTGCAAAAGCCTCTCGCTATTTTGGTTTTTATCGTCGTCTGGTAAACGAGGGTTATGATAAAGTTGCTCTTACTATGCCTCGTAATTCCTTTTGGCGTTATGTATCTGCATTAGTTGAATGTGGTATTCCTAAATCTCAACTGATGAATCTTTCTACCTGTAATAATGTTGTTCCGTTAGTTCGTTTTATTAACGTAGATTTTTCTTCCCAACGTCCTGACTAAAATAATGAGCCAGTTCTTAAAATCGCATAAGGTAATTCACAATGATTAAAGTTGAAATTAAACCATCTCAAGCCCAATTTACTACTCGTTCTGGTGTTTCTCGTCAGGGCAAGCCTTATTCACTGAATGAGCAGCTTTGTTACGTTGATTTGGGTAATGAATATCCGGTTCTTGTCAAGATTACTCTTGATGAAGGTCAGCCAGCCTATGCGCCTGGTCTGTACACCGTTCATCTGTCCTCTTTCAAAGTTGGTCAGTTCGGTTCCCTTATGATTGACCGTCTGCGCCTCGTTCCGGCTAAGTAACATGGAGCAGGTCGCGGATTTCGACACAATTTATCAGGCGATGATACAAATCTCCGTTGTACTTTGTTTCGCGCTTGGTATAATCGCTGGGGGGAGTGTTTTAGTGTATTCTTTTGCCTCTTTCGTTTTAGGTTGGTGCCTTCGTAGTGGCATTACGTATTTTACCCGTTTAATGGAAACTTCCTCATGAAAAAGTCTTTAGTCCTCAAAGCCTCTGTAGCCGTTGCTACCCTCGTTCCGATGCTGTCTTTCGCTGCTGAGGGTGACGATCCCGCAAAAGCGGCCTTTAACTCCCTGCAAGCCTCAGCGACCGAATATATCGGTTATGCGTGGGCGATGGTTGTTGTCATTGTCGGCGCAACTATCGGTATCAAGCTGTTTAAGAAATTCACCTCGAAAGCAAGCTGATAAACCGATACAATTAAAGGCTCCTTTTGGAGCCTTTTTTTTGGAGATTTTCAACGTGAAAAAATTATTATTCGCAATTCCTTTAGTTGTTCCTTTCTATTCTCACTCCGCTGAAACTGTTGAAAGTTGTTTAGCAAAATCAAAATTCATTTACTAACGTCTGGAAAGACGACAAAACTTTAGATCGTTACGCTAACTATGAGGGCTGTCTGTGGAATGCTACAGGCGTTGTAGTTTGTACTGGTGACGAAACTCAGTGTTACGGTACATGGGTTCCTATTGGGCTTGCTATCCCTGAGGGTGGTGGCTCTGAGGGTGGCGGTTCTGAGGGTGGCGGTTCTGAGGGTGGCGGTACTAAACCTCCTGAGTACGGTGATACACCTATTCCGGGCTATACTTATATCAACCCTCTCGACGGCACTTATCCGCCTGGTACTGAGCAAAACCCCCCTAATCCTTCTCTTGAGGAGTCTCAGCCTCTTAATACTTTCATGTTTCAGAATAATAGGTTCCGAAATAGGCAGGGGGCATTAACTGTTTATACGGGCACTGTTACTCAAGGCACTGACCCCGTTAAAACTTATTACCAGTACACTCCTGTATCATCAAAAGCCATGTATGACGCTTACTGGAACGGTAAATTCAGAGACTGCGCTTTCCATTCTGGCTTTAATGAGGATTTATTAAATTGTGAATATCAAGGCCAATCGTCTGACCTGCCTCAACCTCCTGTCAATGCTGGCGGCGGCTCTGGTGGTGGTTCTGGTGGCGGCTCTGAGGGTGGTGGCTCTGAGGGTGGCGGTTCTGAGGGTGGCGGCTCTGAGGGAGGCGGTTCCGGTGGTGGCTCTGGTTCCGGTGATTTTGATTATGAAAAGATGGCAAACGCTAATAAGGGGGCTATGACCGAAAATGCCGATGAAAACGCGCTACAGTCTGACGCTAAAGGCAAACTTGATTCTGTCGCTACTGATTACGGTGCTGCTATCGATGGTTTCATTGGTGACGTTTCCGGCCTTGCTAATGGTAATGGTGCTACTGGTGATTTTGCTGGCTCTAATTCCCAAATGGCTCAAGTCGGTGACGGTGATAATTCACCTTTAATGAATAATTTCCGTCAATATTTACCTTCCCTCCCTCAATCGGTTGAATGTCGCCCTTTTGTCTTTGGCGCTGGTAAACCATATGAATTTTCTATTGATTGTGACAAAATAAACTTATTCCGTGGTGTCTTTGCGTTTCTAAAATATGTTGCCACCTTTATGTATGTATTTTCTACGTTTGCTAACATACTGCGTAATAAGGAGTCTTAATCATGCCAGTTCTTTTGGGTATTCCGTTATT |
| DNA (40-MER) | 3a | 40 | NA | GGCGAAAGGGGGATGTCGCTATTAAACGAGGGAGGGGACG |
| DNA (40-MER) | 3b | 40 | NA | GCTGCAAGATACACTACAAGCGCGCGATAGCAGCCTTTAG |
| DNA (48-MER) | 3c | 48 | NA | GCGATTAAGTACCGAGCTCGAATTAATTGTTACCGAACTGACAGACCA |
| DNA (48-MER) | 3d | 48 | NA | GTTGGGTAACGCCAGGCTGTTGGGGGACTAAAGGGCGCATTAAATGTG |
| DNA (48-MER) | 3e | 48 | NA | AGTCACGAATGCCTGCAGGTCGACACGAGCCGGAACGAGGTCAAGAGT |
| DNA (56-MER) | 3f | 56 | NA | CTAACTCACATTAATTGGGCGCCACTGCTCATTCCCTTATAGTCCACTATTAAAGA |
| DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*AP*GP*GP*AP*TP*AP*TP*TP*C)-3') | 3g | 16 | NA | GTGCCTAAGGATATTC |
| DNA (56-MER) | 3h | 56 | NA | GCTGTTTCCTGTGTGACGTAATCAGATTATACAAACACTCCCAGCAAAAGCATCGG |
| DNA (36-MER) | 3i | 36 | NA | CGCCTGGCCCTGCGGCAAAATCAGTGAACATTGTGA |
| DNA (40-MER) | 1k | 40 | NA | TTGCGGGAATAGTTGCTTTTTTAAAAACAGGAAGATTGTA |
| DNA (35-MER) | 3j | 35 | NA | AGACGGGCCCGAGATAATTACCCATGGCTCATTAT |
| DNA (32-MER) | 3s | 32 | NA | CTGCATTAATGAATCGAAACCTGTAACGGTGT |
| DNA (48-MER) | 3k | 48 | NA | GCCAACGCGAGAAACACCTGTTTGCAAAGGGCGAAAAACCTTTAGGAA |
| DNA (37-MER) | 3l | 37 | NA | GCGGGGAGGCAGCAAGCGGTCCACGCTGGTTTGCCCC |
| DNA (55-MER) | 3m | 55 | NA | TGCGTATTGCGTTGCGGACCTTCACGCAGACGGTTTTCATAAAAAAAAAAAACAG |
| DNA (48-MER) | 3o | 48 | NA | GGAACAAGAAATCAAAAGAATAGCAACAGCTGTTTCTTTTCACCAGTG |
| DNA (38-MER) | 3p | 38 | NA | TTGAGTGTTGTAGAGCAACAGTCAGGAGATATTCACAA |
| DNA (26-MER) | 3q | 26 | NA | AGCAGGCGAAAATCCAGAACGAGTAG |
| DNA (32-MER) | 3r | 32 | NA | ATGGTGGTTCCGAAATAGAGAGTTAGGCGGTT |
| DNA (48-MER) | 1l | 48 | NA | TATTCGGTCGCTGAGGCCACGCATAATTCGCATTGTAAACGTTAATAT |
| DNA (5'-D(P*TP*CP*GP*AP*GP*GP*TP*GP*AP*TP*TP*CP*GP*CP*GP*T)-3') | 1m | 16 | NA | TCGAGGTGATTCGCGT |
| DNA (40-MER) | 1o | 40 | NA | TGACAACAACCATCGCCTTGCAGGTCGGATTCGGGATAGG |
| DNA (40-MER) | 1p | 40 | NA | AGGCACCAATCATCGCCTGATAAACTTAGCCGGAAGCATA |
| DNA (48-MER) | 1q | 48 | NA | GTAAAATACGTAATGCAGTTTCCACCATTCGCTGGTGCCGGAAACCAG |
| DNA (32-MER) | 1r | 32 | NA | GGCTTTGAAAGGGCGATCGCACTCCAGCCAGC |
| DNA (32-MER) | 1s | 32 | NA | ACCAACTTTCAAGTTTGCACCGTAATCAGTAG |
| DNA (32-MER) | 1t | 32 | NA | TAAGGGAATCCGCTCACCGCTTTCCAGTCGGG |
| DNA (32-MER) | 1b | 32 | NA | GGGTTGATGAACGAGTAAATATGCAACTAAAG |
| DNA (48-MER) | 1u | 48 | NA | GACCTGCTCCATGTTATTGTGTCGAAGCTTGCCGTTGTAAAACGACGG |
| DNA (5'-D(P*CP*CP*CP*CP*CP*AP*GP*CP*TP*GP*GP*TP*CP*AP*TP*A)-3') | 1v | 16 | NA | CCCCCAGCTGGTCATA |
| DNA (40-MER) | 1w | 40 | NA | TAAGGCTTGGCTGGCTCTCACTGCCAATTCCACACAACAT |
| DNA (5'-D(P*GP*AP*CP*AP*GP*AP*TP*GP*CP*GP*TP*GP*CP*CP*AP*G)-3') | 1x | 16 | NA | GACAGATGCGTGCCAG |
| DNA (27-MER) | 1y | 27 | NA | CACCCTCATGTTTAGCATCGGTTGTAC |
| DNA (26-MER) | 1z | 26 | NA | CGTACTCAGGAGGTAGCATTAACATC |
| DNA (5'-D(*AP*AP*TP*AP*AP*CP*GP*GP*CP*TP*CP*AP*GP*AP*GP*C)-3') | 1c | 16 | NA | AATAACGGCTCAGAGC |
| DNA (59-MER) | 1d | 59 | NA | TTGGTGGTGGGAAAATTCATATGGTAACACTAAAGTTTTGAAGCCTTAAGATTCAAAAG |
| DNA (51-MER) | 1e | 51 | NA | AGAAACGCAAAGGCGACATGGGATAGCTGAATTTTAAACATTAGTCAAATC |
| DNA (46-MER) | 1f | 46 | NA | TTGGTGGAAAGGTGAATTATCACACGGAAATTATTCATTAAAACAG |
| DNA (5'-D(*TP*CP*AP*AP*CP*CP*GP*AP*GP*CP*TP*TP*GP*CP*TP*T)-3') | 1g | 16 | NA | TCAACCGAGCTTGCTT |
| DNA (48-MER) | 1h | 48 | NA | AAATATTGCGTCACCGTGATACCGTCGTCACCATCAACATCGTAACCG |
| DNA (47-MER) | 1i | 47 | NA | TTGGTGGTGGTGGTGCGGAAACGTCACCAATTTACCATTCGAAAGAG |
| DNA (56-MER) | 1n | 56 | NA | AATTTCTTGTTTATCATTGAGGGAGACAAAAGGACACCACAGAGCCACGCTCAGTA |
| DNA (48-MER) | 2n | 16 | NA | TTTGTTAAAACCGATA |
| DNA (5'-D(P*TP*TP*TP*GP*TP*TP*AP*AP*AP*AP*CP*CP*GP*AP*TP*A)-3') | 2a | 58 | NA | TCCATATAACAGTTGATTCCCAATAGTAGTTTAGTACACAAACTACAACGCCTGTAGC |
| DNA (32-MER) | 2b | 56 | NA | TAAAGCCTTTGCGGGAGTCGTCTTTCTAGCTGACGGTAATCGTAAAACATCAGAAA |
| DNA (32-MER) | 2c | 45 | NA | CAATAAATCATACAGGCAAGGTAAAAATTCCCTCATACTATTTTT |
| DNA (40-MER) | 2d | 52 | NA | GGTGAGAAAGGCTCAACCGTTCCAGACGTAAACAACGCGCCAAAGGGAAGGT |
| DNA (5'-D(P*CP*TP*GP*GP*CP*CP*TP*TP*CP*CP*TP*GP*TP*AP*GP*CP*CP*AP*AP*AP*AP*AP*TP*A)-3') | 2e | 37 | NA | TATATTTTAAATGCAATGCCTGAGTAATGGAGGGTAG |
| DNA (32-MER) | 2f | 48 | NA | TAATACTTCAGAGCATTAGGAACCCCACCCTCGGAATAAGACATACAT |
| DNA (40-MER) | 2g | 48 | NA | TATTTCAACGCAAGGACAAAGAATTCACCAGTCGCCACCCTCAGAACC |
| DNA (32-MER) | 2h | 56 | NA | ACAAGAGAGGAGTGAGAACGATCTGAGTTTCGTAGCAAAATGGCATCAATTCTACT |
| DNA (32-MER) | 2i | 32 | NA | TGAGAGTCTGGAGCAATAAGCAAATCCAAAAA |
| DNA (47-MER) | 2j | 16 | NA | CTATCAGGTTGCGAAT |
| DNA (5'-D(P*CP*CP*AP*GP*TP*GP*CP*CP*AP*AP*AP*TP*CP*CP*GP*C)-3') | 2k | 32 | NA | ACCATCAATATGATATCGGAGACATGACCCTG |
| DNA (40-MER) | 2l | 48 | NA | CCAATAGGAACGCCATCAGCTTTCCTCAGCAGGCTACAGAGCAAAAGA |
| DNA (48-MER) | 2m | 48 | NA | TTAAATTTTTGTTAAAACAACCCGGAGTTAAACATGAGGACACTACGA |
| DNA (48-MER) | 2o | 32 | NA | TGTACCCCGGTTGATATAGCATGTGATTTTGC |
| DNA (56-MER) | 2p | 32 | NA | TGCATCTGCAGGAAGATCGGTGCGGGCCTCTT |
| DNA (56-MER) | 2q | 40 | NA | TCACGTTGACCGCTTCCATTCAGGCTGCGCAAGTTTTCCC |
| DNA (32-MER) | 2r | 24 | NA | CTGGCCTTCCTGTAGCCAAAAATA |
| DNA (48-MER) | 2s | 32 | NA | AGCGAGTATCAGCTCAGCCGACAAAAAGGCTC |
| DNA (37-MER) | 2t | 40 | NA | GCAAAGCGTTAAACGGACCGTAATTCCGTGGGAACAAACG |
| DNA (55-MER) | 2u | 32 | NA | ACGACAGTATCGGCCTCCAGTTTGTAGCAACG |
| DNA (48-MER) | 2v | 32 | NA | TTTCCGGCGTGTAGATGACTTTTTGGCCGCTT |
| DNA (38-MER) | 2w | 47 | NA | TCTAGAGGAGATTTGTACCTAAAAAGCAAGGCAAAAAAAAAAAACAG |
| DNA (32-MER) | 2x | 16 | NA | CCAGTGCCAAATCCGC |
| DNA (48-MER) | 2y | 32 | NA | AGATTTAGTTTGACCAGCGCGAGCCAGAACCG |
| DNA (48-MER) | 2z | 40 | NA | AATTCTGCATAAGTATTTATTCTGAAACATGAGCCTTGAG |
Experimental Data
Method: ELECTRON MICROSCOPY