PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6BKF

Lysyl-adenylate form of human ligiv catalytic domain with bound dna substrate in open conformation

PDB DOI: 10.2210/pdb6bkf/pdb

Classification: LIGASE/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2017-11-08
Deposition Author(s): Bebenek, B. , Kunkel, T.A. , Moon, A.F. , Pedersen, L.C. , Schellenberg, M.J. , Tumbale, P.P. , Williams, J.G. , Williams, R.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.25 Å

6bkf
Literature

Lysyl-adenylate form of human ligiv catalytic domain with bound dna substrate in open conformation

Bebenek, B. , Kunkel, T.A. , Moon, A.F. , Pedersen, L.C. , Schellenberg, M.J. , Tumbale, P.P. , Williams, J.G. , Williams, R.S.

Primary Citation of Related Structures: 6BKF


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA ligase 4 A 621 Homo Sapiens , Synthetic Construct TMAASQTSQTVASHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRCLQKGSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDISITLFSAFKPMLAAIADIEHIEKDMKHQSFYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQKGTKFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQKTQAHTKNEVIDALNEAIDKREEGIMVKQPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWKPFHRKAPPSSILCGTEKPEVYIEPCNSVIVQIKAAEIVPSDMYKTGCTLRFPRIEKIRDDKEWHECMTLDDLEQLRGKASGKLASKHLYIGGD

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*C)-3') p 11 NA GCTGATGCGTC
DNA (5'-D(*GP*TP*CP*CP*GP*AP*CP*GP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') t 18 NA GTCCGACGACGCATCAGC
DNA (5'-D(P*GP*TP*CP*GP*GP*AP*C)-3') d 7 NA GTCGGAC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-11-08
Deposition Author(s): Bebenek, B. , Kunkel, T.A. , Moon, A.F. , Pedersen, L.C. , Schellenberg, M.J. , Tumbale, P.P. , Williams, J.G. , Williams, R.S.