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FASTA Sequence PDB Format mmCIF Format
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6BHJ

Structure of hiv-1 reverse transcriptase bound to a 38-mer hairpin template-primer rna-dna aptamer

PDB DOI: 10.2210/pdb6bhj/pdb

Classification: TRANSFERASE/DNA
Organism(s): Human Immunodeficiency Virus 1 , Synthetic Construct

Deposited: 2017-10-30
Deposition Author(s): Arnold, E. , Das, K. , Miller, M.T. , Ruiz, F.X. , Tuske, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.81 Å

6bhj
Literature

Structure of hiv-1 reverse transcriptase bound to a 38-mer hairpin template-primer rna-dna aptamer

Arnold, E. , Das, K. , Miller, M.T. , Ruiz, F.X. , Tuske, S.

Primary Citation of Related Structures: 6BHJ


Proteins
Molecule Chains Sequence Length Organism Sequence
HIV-1 REVERSE TRANSCRIPTASE P66 subunit A 557 Human Immunodeficiency Virus 1 , Synthetic Construct NFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTNSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG
HIV-1 REVERSE TRANSCRIPTASE P66 subunit C 557 Human Immunodeficiency Virus 1 , Synthetic Construct NFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTNSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG
HIV-1 REVERSE TRANSCRIPTASE P51 subunit B 444 Human Immunodeficiency Virus 1 , Synthetic Construct MAHHHHHHALEVLFQGPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQ
HIV-1 REVERSE TRANSCRIPTASE P51 subunit D 444 Human Immunodeficiency Virus 1 , Synthetic Construct MAHHHHHHALEVLFQGPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
38-MER RNA-DNA Aptamer e 38 NA UAAUACCCCCCCUUCGGUGCUUUGCACCGAAGGGGGGG
38-MER RNA-DNA Aptamer f 38 NA UAAUACCCCCCCUUCGGUGCUUUGCACCGAAGGGGGGG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-10-30
Deposition Author(s): Arnold, E. , Das, K. , Miller, M.T. , Ruiz, F.X. , Tuske, S.