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FASTA Sequence PDB Format mmCIF Format
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6B40

Bbragl-3'tir synaptic complex with nicked dna refined with c2 symmetry

PDB DOI: 10.2210/pdb6b40/pdb

Classification: RECOMBINATION
Organism(s): Branchiostoma Belcheri , Synthetic Construct

Deposited: 2017-09-25
Deposition Author(s): Cheng, T.C. , Schatz, D.G. , Xiong, Y. , Zhang, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.3 Å

6b40
Literature

Bbragl-3'tir synaptic complex with nicked dna refined with c2 symmetry

Cheng, T.C. , Schatz, D.G. , Xiong, Y. , Zhang, Y.

Primary Citation of Related Structures: 6B40


Proteins
Molecule Chains Sequence Length Organism Sequence
RAG1L,RAG1L A 658 Branchiostoma Belcheri , Synthetic Construct ESLQRKRLCKARLYDVTRHHVKHKRLKPLIEHIDEYCNEKDENKGDVLFFLLRSHLYDTGNRSMAEQIDTLWHGESLSCMTPEECLGMRLDMLMTKNQYSKEYNILKERGFSTLCPPKQLDAIEKTLMPGTARYSIEGMDYSEHYFHSPVKMTGDLEVHSGETLEPDSVTMDFHEYVPDFPCPNTKGVRFPYAHAVAKTLEELEDEIVNGLKKLGRDPNDPTLVIHTICKDGADGMGDVSVHKEKSDHLLPDKALRFSFCVLRCSVMHKDTEVTIYEDPNPNSVRSNRPVLECIGDENDDGTVAVCVGPIECQRLLMKDKIMRVHMSDGTQRAHYLTFFNSMVDEKWDRAHGGLAGAGSKYLCTLCEAVRDEALEKAGSYKITRTLKKIEVTASKMKYESQEKDTFGVKGYPLLTTEPWERGIDATHTDINMGNYFKSLIVREMAQVHSWAKTANVKKQIVDAESKLDKHLKESLGLNPTLMMAGNYARELFKAEHADKLVALVDKPDRKSALVEVLAKFRQLRKVYRANWPLNDMSDEVRQYKAKAVEMANDLKTHFPYAPCTNYLHKVIEHVQELIEHPSGVGSVGALSSEGNEAGNKLFRQLRLGHARKGNTYNGLRDVLCTHWLYTSKTLRDKAAXXXXXXXXXXXXXXXXXXX
RAG1L,RAG1L E 658 Branchiostoma Belcheri , Synthetic Construct ESLQRKRLCKARLYDVTRHHVKHKRLKPLIEHIDEYCNEKDENKGDVLFFLLRSHLYDTGNRSMAEQIDTLWHGESLSCMTPEECLGMRLDMLMTKNQYSKEYNILKERGFSTLCPPKQLDAIEKTLMPGTARYSIEGMDYSEHYFHSPVKMTGDLEVHSGETLEPDSVTMDFHEYVPDFPCPNTKGVRFPYAHAVAKTLEELEDEIVNGLKKLGRDPNDPTLVIHTICKDGADGMGDVSVHKEKSDHLLPDKALRFSFCVLRCSVMHKDTEVTIYEDPNPNSVRSNRPVLECIGDENDDGTVAVCVGPIECQRLLMKDKIMRVHMSDGTQRAHYLTFFNSMVDEKWDRAHGGLAGAGSKYLCTLCEAVRDEALEKAGSYKITRTLKKIEVTASKMKYESQEKDTFGVKGYPLLTTEPWERGIDATHTDINMGNYFKSLIVREMAQVHSWAKTANVKKQIVDAESKLDKHLKESLGLNPTLMMAGNYARELFKAEHADKLVALVDKPDRKSALVEVLAKFRQLRKVYRANWPLNDMSDEVRQYKAKAVEMANDLKTHFPYAPCTNYLHKVIEHVQELIEHPSGVGSVGALSSEGNEAGNKLFRQLRLGHARKGNTYNGLRDVLCTHWLYTSKTLRDKAAXXXXXXXXXXXXXXXXXXX
RAG2L M 366 Branchiostoma Belcheri , Synthetic Construct MSSGPIFSSLVTDSSRSSRKKSDSALGTEFTVVCDRVPLRDPSPTVQRFLCFVFDNGSGAMSTLPIDVGGEGISLSDMKEVKAMPHIASGCTAVWGPPLPPKPGKDTKQVILWGGLDKRRWCCSNDLTQVDITITPKTTTAKVSILPADKQDGVPSPRTGHTLVAISSLQAILFGGLELASRHARLGTCAQSCKDGYFYLLDMTTLRWNKLPLPPLVPRAYHSSTWVPASSTMVIVGGITYSGHCPSERLSVSDVVCLKISDTSQYTLTEIHMEGVRDSYVSSSSASALCDDRFVLYGGYHHDKSGLHPPEPSRDLYVMNLQTKKAVVHHAPTRMASAGHTCLRLIDNSVVMIGGTCKSVNCCTNL
RAG2L N 366 Branchiostoma Belcheri , Synthetic Construct MSSGPIFSSLVTDSSRSSRKKSDSALGTEFTVVCDRVPLRDPSPTVQRFLCFVFDNGSGAMSTLPIDVGGEGISLSDMKEVKAMPHIASGCTAVWGPPLPPKPGKDTKQVILWGGLDKRRWCCSNDLTQVDITITPKTTTAKVSILPADKQDGVPSPRTGHTLVAISSLQAILFGGLELASRHARLGTCAQSCKDGYFYLLDMTTLRWNKLPLPPLVPRAYHSSTWVPASSTMVIVGGITYSGHCPSERLSVSDVVCLKISDTSQYTLTEIHMEGVRDSYVSSSSASALCDDRFVLYGGYHHDKSGLHPPEPSRDLYVMNLQTKKAVVHHAPTRMASAGHTCLRLIDNSVVMIGGTCKSVNCCTNL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
31TIR intact strand b 62 NA CAAGATGGCGACCAGACACTGCTGGGTATAGCGTAAGTATCATAGTGCAGCGCGCTGCCAAG
31TIR intact strand f 62 NA CAAGATGGCGACCAGACACTGCTGGGTATAGCGTAAGTATCATAGTGCAGCGCGCTGCCAAG
31TIR pre-nicked strand of signal DNA c 47 NA CACTATGATACTTACGCTATACCCAGCAGTGTCTGGTCGCCATCTTG
31TIR pre-nicked strand of signal DNA g 47 NA CACTATGATACTTACGCTATACCCAGCAGTGTCTGGTCGCCATCTTG
31TIR pre-nicked strand of flanking DNA d 15 NA CTTGGCAGCGCGCTG
31TIR pre-nicked strand of flanking DNA h 15 NA CTTGGCAGCGCGCTG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2017-09-25
Deposition Author(s): Cheng, T.C. , Schatz, D.G. , Xiong, Y. , Zhang, Y.