5ZLU
Ribosome structure bound to abc-f protein.
PDB DOI: 10.2210/pdb5zlu/pdb
Classification: RIBOSOME Organism(s): Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct
Deposited: 2018-03-29 Deposition Author(s): Andrew, S.W.W. , Ero, R. , Jian, S. , Kumar, V. , Su, W.X. , Yong-Gui, G.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.6 Å
Ribosome structure bound to abc-f protein.
Andrew, S.W.W. , Ero, R. , Jian, S. , Kumar, V. , Su, W.X. , Yong-Gui, G.
Primary Citation of Related Structures: 5ZLU
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L31 | W | 71 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MKEGIHPKLVPARIICGCGNVIETYSTKPEIYVEVCSKCHPFYTGQQRFVDTEGRVERFQRRYGDSYRKGR |
| 50S ribosomal protein L15 | I | 150 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MKLSDLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPKRGMQGQVPGEIKRPRYQGVNLKDLARFEGEVTPELLVRAGLLKKGYRLKILGEGEAKPLKVVAHAFSKSALEKLKAAGGEPVLLEA |
| 50S ribosomal protein L16 | J | 141 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MLMPRRMKYRKQQRGRLKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHFRRGGKIFIRIFPDKPYTKKPLEVRMGKGKGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGHKLPIKTKIVRRDAYDEAQ |
| 50S ribosomal protein L17 | K | 118 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MRHLKSGRKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVELVE |
| 50S ribosomal protein L18 | L | 112 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MARLTAYERRKFRVRNRIKRTGRLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLKGNKTEVARQVGRALAEKALALGIKQVAFDRGPYKYHGRVKALAEGAREGGLEF |
| 50S ribosomal protein L19 | M | 146 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MNRGALIKLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADRKRIDQDRAAERAAKEEAQKAQEPKASQE |
| 50S ribosomal protein L20 | N | 118 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MPRAKTGVVRRRKHKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLWIVRINAACRQHGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAELVERAKAAQG |
| 50S ribosomal protein L21 | O | 101 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MFAIVKTGGKQYRVEPGLKLRVEKLDAEPGATVELPVLLLGGEKTVVGTPVVEGASVVAEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEIRG |
| 50S ribosomal protein L22 | P | 113 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDMLEDRLYVKAAYVDEGPALKRVLPRARGRADIIKKRTSHITVILGEKHGK |
| 50S ribosomal protein L23 | Q | 96 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MKTAYDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQVAPGQKIEALEGLI |
| 50S ribosomal protein L24 | R | 110 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MRVKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAKCGGALDTEE |
| 50S ribosomal protein L3 | A | 206 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MKGILGVKVGMTRIFRDDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILREIRDFNPEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVVDVIPEENLLLVKGAVPGPNGGLVIVRETKKAAK |
| 50S ribosomal protein L25 | S | 206 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MEYRLKAYYREGEKPSALRRAGKLPGVMYNRHLNRKVYVDLVEFDKVFRQASIHHVIVLELPDGQSLPTLVRQVNLDKRRRRPEHVDFFVLSDEPVEMYVPLRFVGTPAGVRAGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHASDLKLPPGVELAVSPEETIAAVVPPEDVEKLAEEAAAEVAEPEVIKKGKEEEEE |
| 50S ribosomal protein L27 | T | 85 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRGRLGRYVHVRPLA |
| 50S ribosomal protein L29 | U | 67 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MRKQLEEARKLSPVELEKLVREKKRELMELRFQASIGQLSQNHKIRDLKRQIARLLTVLNEKRRQNA |
| 50S ribosomal protein L30 | V | 60 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE |
| 50S ribosomal protein L32 | X | 60 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MAKHPVPKKKTSKARRDARRSHHALTPPTLVPCPECKAMKPPHTVCPECGYYAGRKVLEV |
| 50S ribosomal protein L33 | Y | 54 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MASEVRLKLLLECTECKRRNYATEKNKRNTPNKLELRKYCPWCRKHTVHREVKI |
| 50S ribosomal protein L34 | Z | 49 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MKRTWQPNRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTPAVRKR |
| 30S ribosomal protein S18 | B | 73 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSGKEQRILAKTIKRARILGLLPFTEKLVRK |
| 30S ribosomal protein S20 | C | 106 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MAQKKPKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAIQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEAAGAPLIGGGLSA |
| 30S ribosomal protein S19 | D | 93 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MPRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGKEAKATKKK |
| 30S ribosomal protein S10 | E | 105 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MPKIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSREHFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEIKTVGGGR |
| 30S ribosomal protein Thx | F | 27 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MGKGDRRTRRGKIWRGTYGKYRPRKKK |
| 30S ribosomal protein S2 | H | 256 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MPVEITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQEAEATETPEGESEVEA |
| 50S ribosomal protein L31 | CC | 71 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MKEGIHPKLVPARIICGCGNVIETYSTKPEIYVEVCSKCHPFYTGQQRFVDTEGRVERFQRRYGDSYRKGR |
| 50S ribosomal protein L35 | AA | 65 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MPKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKLLLPYE |
| 50S ribosomal protein L36 | BB | 37 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MKVRASVKRICDKCKVIRRHGRVYVICENPKHKQRQG |
| Macrolide efflux protein | EE | 497 | Pseudomonas Aeruginosa , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Synthetic Construct | MSLIIKARNIRLDYAGRDVLDIDELEIHSYDRIGLVGDNGAGKSSLLKVLNGEIVLAEATLQRFGDFAHISQLGGIEIETVEDRAMLSRLGVSNVQNDTMSGGEETRAKIAAAFSQQVHGILADEPTSHLDLNGIDLLIGQLKAFDGALLVISHDRYFLDMVVDKIWELKDGKITEYWGGYSDYLRQKEEERQHQAVEYELMMKERERLESAVQEKRQQANRLDNKKKGEKSKNSTESAGRLGHAKMTGTKQRKLYQAAKSMEKRLAALEDIQAPEHLRSIRFRQSSALELHNKFPITADGLSLKFGSRTIFDDANFIIPLGAKVAITGSNGTGKTSLLKMISERADGLTISPKAEIGYFTQTGYKFNTHKSVLSFMQEECEYTVAEIRAVLASMGIGANDIQKNLSDLSGGEIIKLLLSKMLLGKYNILLMDEPGNYLDLKSIAALETMMKSYAGTIIFVSHDKQLVDNIADIIYEIKDHKIIKTFERDCHHHHHH |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S ribosomal RNA | g | 1514 | NA | UGGAGAGUUUGAUCCUGGCUCAGGGUGAACGCUGGCGGCGUGCCUAAGACAUGCAAGUCGUGCGGGCCGCGGGGUUUUACUCCGUGGUCAGCGGCGGACGGGUGAGUAACGCGUGGGUGACCUACCCGGAAGAGGGGGACAACCCGGGGAAACUCGGGCUAAUCCCCCAUGUGGACCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCCCGCUUCCGGAUGGGCCCGCGUCCCAUCAGCUAGUUGGUGGGGUAAUGGCCCACCAAGGCGACGACGGGUAGCCGGUCUGAGAGGAUGGCCGGCCACAGGGGCACUGAGACACGGGCCCCACUCCUACGGGAGGCAGCAGUUAGGAAUCUUCCGCAAUGGGCGCAAGCCUGACGGAGCGACGCCGCUUGGAGGAAGAAGCCCUUCGGGGUGUAAACUCCUGAACCCGGGACGAAACCCCCGACGAGGGGACUGACGGUACCGGGGUAAUAGCGCCGGCCAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGCGCGAGCGUUACCCGGAUUCACUGGGCGUAAAGGGCGUGUAGGCGGCCUGGGGCGUCCCAUGUGAAAGACCACGGCUCAACCGUGGGGGAGCGUGGGAUACGCUCAGGCUAGACGGUGGGAGAGGGUGGUGGAAUUCCCGGAGUAGCGGUGAAAUGCGCAGAUACCGGGAGGAACGCCGAUGGCGAAGGCAGCCACCUGGUCCACCCGUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACCGGAUUAGAUACCCGGGUAGUCCACGCCCUAAACGAUGCGCGCUAGGUCUCUGGGUCUCCUGGGGGCCGAAGCUAACGCGUUAAGCGCGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGGCCUUGACAUGCUAGGGAACCCGGGUGAAAGCCUGGGGUGCCCGCGAGGGGAGCCCUAGCACAGGUGCUGCAUGGCCGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGCCGUUAGUUGCCAGCGGUUCGGCCGGGCACUCUAACGGGACUGCCCGCGAAAGCGGGAGGAAGGAGGGGACGACGUCUGGUCAGCAUGGCCCUUACGGCCUGGGCGACACACGUGCUACAAUGCCCACUACAAAGCGAUGCCACCCGGCAACGGGGAGCUAAUCGCAAAAAGGUGGGCCCAGUUCGGAUUGGGGUCUGCAACCCGACCCCAUGAAGCCGGAAUCGCUAGUAAUCGCGGAUCAGCCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGACUGGGGCGAAGUCGUAACAAGGUAGCUGUACCGGAAGGUGCGGCUGGAUCACCUCCUUU |
| P-site tRNA | dd | 77 | NA | CGCGGGGUGGAGCAGCCCGGUAGCUCGUCGGGCACAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2018-03-29 Deposition Author(s): Andrew, S.W.W. , Ero, R. , Jian, S. , Kumar, V. , Su, W.X. , Yong-Gui, G.