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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5XY3

Large subunit of trichomonas vaginalis ribosome

PDB DOI: 10.2210/pdb5xy3/pdb

Classification: RIBOSOME
Organism(s): Trichomonas Vaginalis

Deposited: 2017-07-06
Deposition Author(s): Gao, N. , Guo, Q. , Ji, Y. , Lai, D. , Li, Z. , Lun, Z. , Suo, X. , Xie, Y. , Zheng, L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

Literature

Large subunit of trichomonas vaginalis ribosome

Gao, N. , Guo, Q. , Ji, Y. , Lai, D. , Li, Z. , Lun, Z. , Suo, X. , Xie, Y. , Zheng, L.

Primary Citation of Related Structures: 5XY3


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
25S ribosomal RNA 1 2765 NA CGUAGUCUGCCAUACGCAGGAAGACCCGCUGAACUGAAGCAUCUCAUUAAGCGGAGGAAAAGAAACUAACUAGGAUUCCCUUAGUAAAGGCGAUCGAAAAGGGAACAGCCCAACGUCUUAAUCCCGCAAGGGAAAUGUAGUCGGUUCACCUAUUGCACUGGUCUAAGUCAGAUGGAAUGCUGCGCGAUUCAGAGUAAAAGCCUCGUAUGACCAACCGCAAGCUUACGAUGGACCGGGGAGAGUCGGAUACUUUGAGAGUAGUGUCUUAAGGGGGUGGUAUGUCCCAUCCAAGGCUAAAUAACGUGAGGAGACCGAUAGAUUACAAGUAGUGUGAACGAAAGAUGAAAAGAACUCUAAAACAGAGGGUGAAAAGUUCCUGAACUUGCUUAGGGUUAAGGCUAUUUAUAGUACCCGUCUUGAAACACGGAUUAGGGAGUUUAUCUGUAGUGCGAGUCUUUGCACGUUAACUGUAAAGGCGUAGAGAAAGCAACUGGCGUUUGCAUGGCUACUGAGCAUUACUGAUAGGACCCGAAAGGUGGUGAACUUUGCCUGCACAGGUUGAAGUCAGGGGAAACUCUGAUGGAGGACCGUACGGGUUAUUGAUGUGCAAAUCAUUUUUCUGAUGUAGGUAAAGGUGCGAAAGACUCAUCGAACCACCUAAUAGCUGGUUUCCUCCGAAGUUUCCCUCAGGAUAGCUGUAAUGCAUUUAGUUAAGGGGAGUAGAGAUAUGGGUAGAGGUGCAGGGAGCCUUCGGGUUCUCAACUUAUUUCCAAACUUCGAACCUCCUUGUUAGGCAUUUACCUAACUGGAAAUGCUUAAAUGAAUUAGCGUUACAAGUGGGCUCUGACCGGUAAGCGGUCAUGGCGAAAUGGGAUGAACCAUACGUCUGAAUAAGGUGCCGAAAUGUACUAUCACUGAUACCAUAAAGGGAGUCCAUGUAUUUAGACAGCAGGUCGGUGCCCCUAAAAGCAGGUAUCCGCUAAAGAGUGUGUUAAAACUCACCUGCCGAAUACUAGGGCCCCGAAAAUGAAUGGCGCAUAUAGUACUACCGAUCUCAGACAUCAGUUCUAUUGAACUGAGAGUAGGGGGAUGUGGACAUUUUUGUGAAGGUGCAAUGUGAGUUGGACUGGAAGAAUGUCUAUUACAGAUCCUAAUUGAAGUAGCGAUUAUCCAGGCUUGUAUCCUGGGGGCUGAUGAGGAGUAGGGUUUCUGGACAACUUAAACAGAUCCAGAGUUAGUCGAUCCUAAUCUCAAUAAUGGGAGAAAGGGAGUACAGUUGAUAUUCUGUAACUGACAACAGUUCGCGGCAACGCAUACUAUUUUUCUCCGCCAAUCUUAUACCGUUGGUAGGGAUCUCUUUCCUACAUGACAGUACUAAUACCCAGGGAAACUGGUCAUCAGGCGAACUGCGGCGUUCUGCUGGCAAAACAUAGCUUCGGUUAUGUCAAUGGCUAUUGGAUUGGUCCAUGAAGCGAAAAAUAGUUUACUGUGUCACUCGUACCGAUAACCGCAUCAGGUCUUCUAGGUAAGUAGCCUAUGGCCAUUGAGGCAUGAUAGUUCAGGGAAUUCGGCCAAUUAGAGCUGUAACUUCGGGAUAAAGCUUGGCUCUGAUGAAAAUCAGAACCGAUUGUUACGCGGAGAGCCCAACUGUUUAAUAAAAACGUAGUGUCGCGCUGUGGUAGUAUAGCCAGUGAACGCGACAUGAAUCCUGCUCAGUGCUGUGUCUGUUAAUAUGGUUCAAGCCAACGAAGCACCGGUAAAUAGCUGGGGUAACUAUGACUCUUAUCAAAGUAGCGAAAUACCUCGUCACUUAAUUAGUGACCUGCAUGAACGGAGCUAUGAGGUUCUCACUGUCCCAAACUGUCUCUCAGCGAACCAACUGUAGUGGGAACGGUCACUAGAUAUCCAGCGGGGAAAGAAGACCCUGUAGAGCUUCACUUUGGUCUAGUCUUGUAUAGUUCCUGCGGGGGUGUAGACUAGGUGGGAGAGCAAUCGAUUCUGAAAAACCACUACCCUGUUUGGAAUUAUGCUUACCUAUCACAAGGAAUAGGACUAGAUAGAAAGUUUGGCUGGGGCGGCACACCUUCGAAAGAGCAGCGAAGGUGUCCUAAGUUGAGCUCAGUGAGGACAGAAAUCUCACGUUGAGGAUAAGGCCAAAAGCUCAAUUUACUGUGCCUUUUUGUACUAGGAUCAGUUACGAAAGUAAGGCCUAACGAUCCCUAAAUAGCCUCAGGUGCGUGAGGAUUGGGGUGACAGACAAGUUACCUCCGGGACAACUGGCUUGUGGCUGCUAAGAGAUCAAAUCAACGCAGCUUUUUGAUUCUUCGAUGUCGGCUCUUCCUAUCCUAGUGAUGUACAAGUUGCUAAGGGUCGGAUUGUUCACCCGUAUUAGGGAUCGUGAGCUGGGUUUAGACCGUCGUGAGCCAGGUUUGUUUUAUCCUACUGGAUAUAGCAUCAUGAUAGUAGAUUGAUUUAGUACGAGAGGAACUGUUGAUUAUGGCCUCUGGUUAGCGAUUAUCGGAAACGGUAUGUCGCGCAGCUACGCCGUCUGGGAUAAUGGCUGAAAGCCUCUUAAGCCAGAAGCCCAUCUAGAAAGUGAUGCACGUGAUGUUGGACCGAUACGAAUAAUCAUACUCAAAAGGUCCGCUUCAUAGGUAACCCAAUGUAGAAGACAUUGUGUGAACGAAGGUACUGUAAGCAGUGGAGUGGCAUUACGUCCACGACCUGUUGAGGUUCAGCUUCGCUUCUAGGUUUCCAAAUAUUUU
5S ribosomal RNA 3 118 NA GAAGCGGCCACACCCGGCUGGCAACAUCCAGCUCCACUCCGAACCUGGAAAUUAAGCAGUCGCGGGCCACAUCAGUACUGGGCUGGGCGACUUCCCGGGAACGUGCGGUGCUUGCUUC
5.8S ribosomal RNA 4 162 NA AAGUCUCUAAGCAAUGGAUGUCUUGGCUCCUCACACGAUGAAGAACGUGGCAUAAUGUGUUAAGUAACCGGAGUUGCAAACAUCAUGACAGGUUAAUCUUUGAAUGCAAAUUGCGCUAAACUCGAUCUCGGUCGAGAAGCAUGGGUGUGACAGUACUACAUC

Proteins
Molecule Chains Sequence Length Organism Sequence
Ribosomal protein L34e, putative G 116 Trichomonas Vaginalis MVDNRYTLRRSLGFHTIRNRVAPVRTPGNKLVAHYIAKRQNGPHCAETGKRINGIKCVKTCELRRMKKNQRTVSRPYGGVYCGSVVKDRIINAFMEEEARAAQERKMANEQKKKGK
Ribosomal protein L29, putative H 124 Trichomonas Vaginalis MGHLKGKELIKKTRQELLDELAGLEKKLFELKGQKAASAAATKLTEIKNTRRDVARVKSILMVSQRKALQEKYAKAKLVPIDLRKHQEKSLRNKLAPKYANKLTAQESRRHKCLFERKFALKAQ
Ribosomal protein L36e, putative I 91 Trichomonas Vaginalis MSEEQQKVLAPKRECGLHSSGKRVNFARKIVHELVGWQPYERHTMDLIKIERRRAARQFLKKRLGTHRRAMKKLNTLEEVVQEESLHHHHE
Ribosomal protein L37 J 81 Trichomonas Vaginalis MGAGTPSFGPRHNKTHTICRRCGNRCFHIQKSKCAKCGYPDATMRHYDWEKKAHRKRAQGSGEMRHLKVTFAKLQRAYAPK
60S ribosomal protein L39, putative L 51 Trichomonas Vaginalis MAAHKTLRTKRILCKAMKVNRPMPQFIRQMTGVRHIRNPLTRHWRRRKMNI
Ubiquitin, putative M 132 Trichomonas Vaginalis MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEGIPPDQQRLIFAGKQLEDGNTLQDYSIQKDSTLHLVLRLRGGGKEAYEPSLRILAEKTNVKRSVCRKCYARLSERAQQCRHKQCGHCKSIRPKKAGKE
Ribosomal protein L15 N 204 Trichomonas Vaginalis MGAFTYLRELYTKKQSEVMRFILRLRCWEYRQLPELVRLTHPSRPDKARRMGYKAKQGMVVYRIRVRKGSRRRVASKNRQYGKPRTHHIYKLTPSLNLQAIAEQKAGKQLPSLRLLNSYWVNQDGAFKYFECIFVDPVHPAIQHDAKLNWICDSVHTRREARGLTAAGRKHRGLSGVGHGFRHLRPSRYADWKVRNVFKLRRWR
60S ribosomal protein L44, putative O 104 Trichomonas Vaginalis MVHHPKTKKFFCKFCKKHTMCKVSQASRGEERHSALGRRRYDRKQKGFGGRVKPILRRSKKTSKKISLRFTCQSCKKATMYCLGRLRKFEWTVEKKKKHAEPTW
Uncharacterized protein P 92 Trichomonas Vaginalis MARRTKKVGICGKYGVRYGASLRKTIKKIEISQRKKYPCAFCGKDSVKRNAVGIWTCTKCGKAVAGGAYTPTTPAALTARAAYKRIREAQAK
60S ribosomal protein L18, putative Q 186 Trichomonas Vaginalis MGVDLDHRVPRKQRQEPKTADAQMKMLHNLYAFLARRTGNDFNAKIAHRLCISRTNRRPYSLSRLATALNGKEAETIAVLVAKITNDERLLEVPKMKVCALKFTETARARILAAGGECITFDQLAQLRPTGDKCLLLEGDRTRRLVNKHFGAAPGDDNSKTRPKVASHGRKFEMARGRRKSRWYHA
60S ribosomal protein L19-3, putative R 178 Trichomonas Vaginalis MSSLKLQKRLAASVLDCGVRRVWMDDSEVSTIAMANSRQQIRKLINDGIIVKRPVKVHSGARHTKRILAKRLGRHTGYGKRRGGRNARLTGKFQWIRRIRVLRKVLVDYRKRNEIDCHLYRKLYLKAKGNEFRNRRNLVEHIQTLKAENLREKTLQSQIDARRARSRRVRERKNGVSQ
60S ribosomal protein L18a S 176 Trichomonas Vaginalis MSLKQYLVIGRPYPTKEIPNPPAVRVQVFAPDEVIAKSKFWTVAQRIARLKKAHGEVLAVKHVIEPEPTRVKNYGVWLSYRSTRNHHNVYKEYRDTTTEGAATKMLAELAGTHDVSADNISIIKIAEVADKDLVHKNISQFTHENIKFPMLKQSIRAPTASARKVFAATRPTVCGF
Ribosomal protein L21e, putative T 159 Trichomonas Vaginalis MGHTEGLRHATRYLFARKFRKHGAPAPSITLRTFRIGDIVDIKVNGALHSGMPNRVYHGATGIVWNVSPHAVGILVKRRVNNHIAPKRIYVRTEHVFPSKSKNDFVARCQANLKAHEEAKKAGTKIALPKRLPAQPRASHVVKPELIQTITDAPFRENW
60S ribosomal protein L22-1, putative U 106 Trichomonas Vaginalis MASSVFYVDCSAPVADKFFQLQEFVEYLQSHMKVDNLRKNLANKVTIEADAGANKIVVNASVKYSKRAVRYYARKFLAKKDIRSRFHVIASGKDTYELRPYRVSNE
60S ribosomal protein L23, putative V 140 Trichomonas Vaginalis MSKRGRTGQQGTKFAMTAGLPVGAVINCCDNSGAKNMFIISVRGHKGRLNRLPAASVSDLIVVTCKKGKPALRKKVSMGVVVRQRAIWRRKDGVVIGFQDNAGVIINDKGEMKGSAITGPVAKEAAELWPKVASVAPAVF
Ribosomal protein L24e, putative W 113 Trichomonas Vaginalis MSTKTEICGFSGHIFHAGHGRVHIREDKHLMAFESRKAFRMWERKRNPRKIAWTEHYRHDHKKSVADTAATEKRAQRKKATRTYAGVAMEGNQHQMVQIVKKRVARKPVAKKN
Ribosomal protein L23, putative X 140 Trichomonas Vaginalis MSGKAQAAAQTLAQGQKKEVTKTRNFTKFGKNAAQVVPRRPAFEHKAVKPVSLKHNDYKIIRGPVTSDKSTVKIENENTMTFWVDIKATKTEIAAAFNRLYKVKPVKVCTVITSKFVKKAYIRLPANVEAMNIATEIGFA
Ribosomal protein L24, putative Y 138 Trichomonas Vaginalis MVKTNPFVSSQARKVRKSYFNAKKDAKHVAMSAPLSKELQEANGIKRLPIRRDDEVMIFSGRMQNRTGKVTAVKLSEMRIYVDTFTTEKINGQAVSFPVHPSNVVITKLKMDKARKNLIELRRLGRDQILAKLGHKKQ
Ribosomal protein L27e, putative Z 139 Trichomonas Vaginalis MSLLQAGRFVVMLQGRHAGKKAVVLAAYPEGTEDRKFPYAIVMGIEKYPKKVTKDMPTEVLVKKTQVKLFVKAVNFNHVMLTRHNVKDEDFFKKISVEKVVAALKDAPAKKALLTEYAAVLRQKYLNNKMAWFFKPLQF
Ribosomal protein L8, putative A 251 Trichomonas Vaginalis MGHIVRAQRRGNGSVFQAHTHHRVGPAKFRALDAAERTSVISGMVKEIIHDPGRGAPLAKLIYKKAEGQGFDSALVIAPEGIHTGQFIKCGAQADLHIGNILPLAQIPEGTEICNVEHRPGDGGRYGRCSGDSCRVIGHTENYTRIQLPSGRKALVSNICRATLGIVAGGGRPEKPLLKAGNVHYKYKAKRHTWPVVCGIKMNPVDHRHGGGSHQHMGAPGTVARSARPGQKLGLIASRRTGRRRGTVNLA
Uncharacterized protein B 415 Trichomonas Vaginalis MSHRKFNAPRRGSLGFLPRGRSHAVRGRVRSWPKDDASQKPHLCAFIGYKAGMTHVLRDVVRPNSRLHKKEACEPVTILETPPMFVVGIIGYKPTVEGLKPVTTVWASYVNEEVKRNYYKNWYQSKARKAFSCLSNGKAAEKREKQLEELQKEATVIRVIAHTQSAKTTTRGVDANEQGAKKVLKGNHLGQKKAHMIEIQINGGDVAAKLNYAKSILEKEIKVADVFTEGEQIDTIGVGKGFGWEGVIHRYGTKRLQKKTHRGRRKVACIGPWNPARVLWSVARYGQRGCHHRTEMNKRIYRIGAAEVEGKINEGGSTSFDLTKKSINPMGGFPHYGLVKDDFLMIKGSVVGTVKRAITLRKTININTRRIATEEINLKWIDTASKFGHGRFQTKEERSKFLGKLKISKKNETQQ
Ribosomal protein, putative C 370 Trichomonas Vaginalis MSRQTVNVLAQDGQKASTIELPKVFDTPIRAEVVKEVYVNLAKNAQQPHANDPMAGKKVSAISWGTGRAKACVPRVNGSGSNRNGQGAYANFCRGGHRFNPPTLLRRWFRPVPSRQRKFAIASAIAATAVVPLVQARGHVLGEVKEVPIVVVDAVQEIKRTRDAVELLKKVGVYGDVQRVLDGSVHRSSKGKFRRAAYKTKKGPLVIYNEDKGIVKAFRNIPGVETISVKALALAKLAPAAQVGRLTVWTESAFKALDGIYESKKRFSLPRSIMTNADIEAVITSDAVQSVLNEKKEVVPLPKCRCCKKLSVGACEDWQKALKEVAELRAAQEAKRTSPEVVKAVFAEAVAAQPATPDNMSTQIINHIPL
Ribosomal protein L5 D 308 Trichomonas Vaginalis MSAKLVKNAGYFSRFQTKFRRRREAKTDYVQRTQLIQQDKTKYGAAKYRLVARITNTKVIAQIVVAELTGDKTVCQALSTELPKYGIKLGLSNYPAAYATGLLVARRFLTQMKLADVFKTEITEEYLNDEENRRPFKVILDVGLARTTTGAKVFAVMKGAVDGGLFIPHNVCRLACKFDKKDKDAGKDRKDVPADKIVKGNQYYILGGAVADYMRKLKKESEEKYNKQFSRYVKAGITADNLEKIYKDAHAAIRKNPAATVIADKKKHAEEMKQKHAPKKPQTKKLSFEEKRKILNEHLVAAGLPPRK
60S ribosomal protein L6, putative E 151 Trichomonas Vaginalis MAELLFISPIAKKDIKRPSWRGIPRISFTRPAVAAEVDPIAKPACNAKAVETRANLKVGTVVIIVGGEHQGKRAVVVADQGAGIVKVAGPVVPVNEISQDYLIATSTSIDVAANATEAQVEAAAAKVPEMVDYLKAPFTIKKGNRIHLMKF
Ribosomal protein L30p/L7e, putative F 239 Trichomonas Vaginalis MGKPLPETLQKIAARVEAQKAAYLKKKEELLAAAKANEAKIQERAKKYAAEYVSQTKAEIDAENKATAEGAFYVPAEAKFAFVIRTKGTNKLHPDVRKILHLFRLNQKHNAIFVRLNKATIEMLKRVTPQVAFGYPSVDMVRKLIYKLGTANLNGQRIPIADNQIIKVALGHLCIESVEDLAHEIYTVGPNFAAANRFLAVFKLHAPKGGYKKINRAYVEGGDYGNREHLIDELIERMI
Ribosomal protein L38e, putative K 74 Trichomonas Vaginalis MPKQVTTPKEFLALAARSDAKWVKVKKASDDNTKFKLRTTKYLYTLSVKPKFVELVQNSIPESLEVIVLDKKAE
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2017-07-06
Deposition Author(s): Gao, N. , Guo, Q. , Ji, Y. , Lai, D. , Li, Z. , Lun, Z. , Suo, X. , Xie, Y. , Zheng, L.