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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5XXU

Small subunit of toxoplasma gondii ribosome

PDB DOI: 10.2210/pdb5xxu/pdb

Classification: RIBOSOME
Organism(s): Toxoplasma Gondii

Deposited: 2017-07-05
Deposition Author(s): Gao, N. , Guo, Q. , Ji, Y. , Lai, D. , Li, Z. , Lun, Z. , Suo, X. , Xie, Y. , Zheng, L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.35 Å

Literature

Small subunit of toxoplasma gondii ribosome

Gao, N. , Guo, Q. , Ji, Y. , Lai, D. , Li, Z. , Lun, Z. , Suo, X. , Xie, Y. , Zheng, L.

Primary Citation of Related Structures: 5XXU


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
18S RNA 2 1791 NA AACCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUUAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAGCUUUUAUACGGCUAAACUGCGAAUGGCUCAUUAAAACAGUUAUAGUUUAUUUGAUGGUCUUUACUACAUGGAUAACCGUGGUAAUUCUAUGGCUAAUACCUGCGCACAUGCCUCUUCCCCUGGAAGGCAGUGUUUAUUAGAUACAGAACCAACCCACCUUCCGGUGGUCCUCAGGUGAUUCAUAGUAACCGAACGGAUCGCGUUGACUUCGGUCUGCGACGGAUCAUUCAAGUUUCUGACCUAUCAGCUUUCGACGGUACUGUAAUGGACUACCGUGGCAGUGACGGGUAACGGGGAAUUAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCUAAGGAAGGCAGCAGGCGCGCAAAUUACCCAAUCCUGAUUCAGGGAGGUAGUGACAAGAAAUAACAACACUGGAAAUUUCAUUUCUAGUGAUUGGAAUGAUAGGAAUCCAAACCCCUUUCAGAGUAACAAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGUUGCAGUUAAAAAGCUCGUAGUUGGAUUUCUGCUGGAAGGCCAGUCCGCCCUCAGGGGUGUGCACUUGGUGAAUUCUAGCAUCCUUCUGGAUUUCUCCACACUUCAUUGUGUGGAGUUUUUUCCAGGACUUUUACUUUGAGAAAAUUAGAGUGUUUCAAGCAGGCUUGUCGCCUUGAAUACUGCAGCAUGGAAUAAUAAGAUAGGAUUUCGGCCCUAUUUUGUUGGUUUCUAGGACUGAAGUAAUGAUUAAUAGGGACGGUUGGGGGCAUUCGUAUUUAACUGUCAGAGGUGAAAUUCUUAGAUUUGUUAAAGACGAACUACUGCGAAAGCAUUUGCCAAAGAUGUUUUCAUUAAUCAAGAACGAAAGUUAGGGGCUCGAAGACGAUCAGAUACCGUCGUAGUCUUAACCAUAAACUAUGCCGACUAGAGAUAGGAAAACGUCAUGCUUGACUUCUCCUGCACCUUAUGAGAAACCAAAGUCUUUGGGUUCUGGGGGGAGUAUGGUCGCAAGGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGCGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGGAAACUCACCAGGUCCAGACAUAGGAAGGAUUGACAGAUUGAUAGCUCUUUCUUGAUUCUAUGGGUGGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGUGAUUUGUCUGGUUAAUUCCGUUAACGAACGAGACCUUAACCUGCUAAAUAGGAUCAGGAACUUCGUGUUCUUGUAUCACUUCUUAGAGGGACUUUGCGUGUCUAACGCAAGGAAGUUUGAGGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUUCUGGGCUGCACGCGCGCUACACUGAUGCAUCCAACGAGUUUAUAACCUUGGCCGAUAGGUCUAGGUAAUCUUGUGAGUAUGCAUCGUGAUGGGGAUAGAUUAUUGCAAUUAUUAAUCUUCAACGAGGAAUGCCUAGUAGGCGCAAGUCAGCACGUUGCGCCGAUUACGUCCCUGCCCUUUGUACACACCGCCCGUCGCUCCUACCGAUUGAGUGUUCCGGUGAAUUAUUCGGACCGUUUUGUGGCGCGUUCGUGCCCGAAAUGGGAAGUUUUGUGAACCUUAACACUUAGAGGAAGGAGAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUC

Proteins
Molecule Chains Sequence Length Organism Sequence
Ribosomal protein eS8 I 205 Toxoplasma Gondii MGISRDRRHKHRRTGGRMPVHQKKRKFELGRPPAMTKLGPKRVRPVRCRGGNMKYRALRLDTGNYSWSSQKIAKKTRLLGVVYNASNNELVRTNTLVKNSIVAIDATPFKAWFRSFYGLDLGKKKAGQEEEGSRKVSKHTLCLQNKHRQQGVPKLDPLLEEQFNTGRLLACISSRPGQSGRADGYILEGEELMFYKRKMDKKKHK
Ribosomal protein uS4 J 188 Toxoplasma Gondii MTKSYRTYSKTARSPKRPFEKERLDQEMKLLGEYGLKNKREVWRVQYALAKIRSAARELLTLEEKDPRRVFQGTALLRRMVRLGLLGESEQKLDYVLGLTVAKFLERRLQTKVFKLGLAKSIHHARVLIRQRHIRVGKHIVDIPSFMVRVDSEKHVDYAITSPFGGGRPGRVKRRSLKGGNAEGGDDE
Ribosomal protein eS10 K 152 Toxoplasma Gondii MTVPGMKFSLIPKANRKAIYEYLFKEGVIVVQKNGKIERHPEVPVPNLHVMMTLRSLQTKKFVEEKFNWQHNYYFLTNEGIEFLRTYLHLPPTVFPSTLTKKSTGRPTRGAGEGMGEGGDMNGDWRPRGGFGRGRGRMGDRPDRAERAPRYA
Ribosomal protein uS17 L 161 Toxoplasma Gondii MATADVQTERAFQKQDGVSSLGRLHLTGQKKRTQRYWKDVGLGFQTPRLAKESKYVDKKCPFTGNVSIRGRVIKGMVISTKMKRAVVIRRNYLHFVPKYSRFEKRHKNVTCHLSPCFEQVKEGDIVTAGQCRPLSKTIRFNVLKVEKNQVFGNVRKQFRLF
Ribosomal protein eL41 M 39 Toxoplasma Gondii MAHGASRYKKARAKMRWKWKKKRTRRLQRKRRKMRQRSR
Ribosomal protein uS15 N 151 Toxoplasma Gondii MGRMYGPGKGMSASALPWRRKPPTWLKIKPSDVEEHIAKLAKKGQTPSQIGVTLRDSFGVPQVKSVTGNKILRILKLQGLAPELPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILVESRIHRLARYYKRTKQLPATWKYQSATASALVA
Ribosomal protein uS11 O 156 Toxoplasma Gondii MAPKKSAKAATGEEGEAQGSGLGPATRDGEIVFGVAHIYASFNDTFIHVTDLSGRETLVRVTGGMKVKADRDESSPYAAMMAAADVAARCKELGISAVHVKVRAAGGTRSKTPGPGAQSALRALARSGLRIGRIEDVTPIPTDSTRRKSGRRGRRL
Ribosomal protein uS19 P 150 Toxoplasma Gondii MADAGDAAANQPKRRTFRTFSYRGVELDKLLDMKMEDLLELFRARQRRKFQRGIKRKATTLMKKLRISKKNCAFGEKPEPVNTHLRDLVVVPEMIGSVVGVYNGKQFINVEIKPEMVGYYLGEFSISYKPVRHGKPGIGATHSSRFIPLK
Ribosomal protein uS9 Q 148 Toxoplasma Gondii MADIGKRPKKRVQTFGRKKNAVAVALCTQGKGLLRVNGCPLEHLQPEALKVKAFEPLLLLGKERFQDVDIRVRVSGGGYVAQIYAIRQAIAKAVVAFNQKYVDEATKKEVRDILVAYDRSLIVADPRRCEPKKFGGPGARARYQKSYR
Ribosomal protein eS17 R 132 Toxoplasma Gondii MGRVRTRTVKRAARQIVEKYYAKLTLDFQINKKISEEVAVIPSKRMRNRVAGFVTHLMKRIQKGPVRGISLKLQEEERERRMDFVPERSEVDVATITVDQDTADMLRALDINLPNVVVPSAGRPSNNQNRRN
Ribosomal protein eS26 A 112 Toxoplasma Gondii MPTKRRNGGRAKHGRGHSAVVRCSNCGRSCPKDKAIKRFNVRNIVDASSQRDLREASVYNTYTLPKLYIKQCYCVSCAIHSRVVRVRSVEQRKVRENPQRRPQGGQQGQGNN
Ribosomal protein uS13 S 156 Toxoplasma Gondii MSIQVSNNQDFQHILRILNTNVDGREKVVVALTAIRGIGRRVSNLICKKADIDTNKRAGELTADEISKVVAIASTPQQFKIPTWFLNRQKDVKDGKHKHVVANGLDTVWREDLERLKKMRLHRGLRHYWGLKVRGQHTKTTGRHGRTVGVAKKKGC
Ribosomal protein eS19 T 160 Toxoplasma Gondii MSNPAYLYETPLETRVHTVKDVKADAFIALYANHLKKRGRFQLPKWIDYVKTAHAKELAPYDPDWLYIRAAAILRHLYIRPDCGVGGFRKVFSCRQRRGVRPNHTSKASGKIIRYILQQFEEMGLVESDPEKPGRRLTKNGQRELDVIARQCAKPAVASD
Ribosomal protein uS10 U 233 Toxoplasma Gondii MHVFSDVCARPGSPEKTDRRRIFCAKVPTKRRKKCVFCVFEASPELCAFSALPPHVTRDNRCLSVSLSVSRLPSSSRALPPAPASSSHSSCPRSQPLPGLLLFLKSSEGEPQKAKMSKLMKGGLEGEEQRLHRIRITLTSKDLKSIERVCTELINGAKEKNLQVAGPVRLPVKTLRITTRKSPCGEGTNTWDRFELRIYKRLIDLHSPSDVVKQITSINIDPGVEVEVTIIDM
Ribosomal protein eS21 V 82 Toxoplasma Gondii MQNDEGRIVDLYIPRKCSATGRLIPAKEHGAVQINVGQVDEHGRYTGEYHAVAISGAVRQRGESDACLNRLMHEKGLLSFAK
Ribosomal protein uS8 W 130 Toxoplasma Gondii MVRMNVLADCLKTLVNAEKRGRRQVLIRPSSKVIIKFLQCMQRRGYIGDFEIVDDHRAGKIVIELLGRINKCGVISPRFDIQVDKIEQFCSNLLPSRQFGHLVLTTAYGIMDHEEARRKHTGGKILGYFF
Ribosomal protein uS12 X 143 Toxoplasma Gondii MGKPNGIRTARKLRSRRRVQKWADKTYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIDENDEVLVAGFGRSGHAVGDIPGVRFKVVKVAGASLLALFKEKKEKPRT
Ribosomal protein eS24 Y 135 Toxoplasma Gondii MADSGAFSLRFRKLKTNPLLQRKQFGVDILHPSRGSVSKKELVEKIAKQFRVSDSQSIVVFGLKTAFGGGRSSGFAMIYDNPNAAKKFENRFRLVRLGYVEAKPTKGRRAYKELKNRRKKVRGKEKAKCSGAAKK
Ribosomal protein eS25 Z 161 Toxoplasma Gondii MRELRRLYGYMFRKDRQFFEIARFLIRVNSRVPVPAYGFQHVSLCFVPVCRFTMAPKEKKTKEQIAAAAAAGSRKNKKKWSKGKSKDKLNHSVLFDKATYDKLLADIPKARLITPHTVCERLKVNASLARQAIRYLKDQGLIKIVGEHHHSQYIYTRNTSA
Ribosomal protein eS1 B 259 Toxoplasma Gondii MAIGKNKRMSKGKKGGKKKIGDPFLKKEWYDLKAPTLFNVRNFGKTLVTKSQGTKLAVDGLRGRVYEVNLADLNNDEDQGFRKIKLCCEDIQGRNCLTDFHGMDMTRDKICSLVRKCHSLIEAFVDVTTLDGYTLRMFCIAFTKRRPEQVKSTCYAQTSQIRAIRKKMMTIMSAEASKCQLRDLVKKFIPESIGKDIENACKGIFPLQNVFIRKVKMLKKPKFDLTKLMELHGEAEDVGRKVQAESGEAQNTLTAETKA
Ribosomal protein uS5 C 269 Toxoplasma Gondii MAERGSFGRGFGRGGGRGRGRGRGRGRGGAEDDLKDWVPITKLGRLVRDGKISSIEEIYLFSLPIKEYQIIDHFFQPGNCAAPLKDDVMKIMPVQKQTRAGQRTRFKAFVAVGDSNGHCGLGVKCAKEVATAIRGAIIAAKLSLVPVRRGYWGNKIGEPHTVPMKVSGRCGSVRVRLIPAPRGTHIVGAPTTKKILGFAGIKDCFSNSKGSTKTRGNFMKALFDALSQTYGYLTPELWTPTVYTKSPYQEWSDYLARTTKDSAVSRPLA
Ribosomal protein uS3 D 235 Toxoplasma Gondii MASTGNTCKKRKFVKDGVFQAELNEFLSCTLSEDGYSGVEVRVTPIRTEIIIRATRTREVLGDKGRRIRELTSVVQKRFGFAPDSVELFAERVENRGLCAMAQAESLRYKLLKGLAVRRACYGVLRHIMESGAKGCEVVVSGKLRAQRAKSMKFKDGYLISTGEPSKMFVDQAIRSVQLRQGVLGVRVKIMLPHDPEGKRGPANPLPDTIIVMDPKPEIPVVQPEEMDEGVLGPM
Ribosomal protein eS4 E 263 Toxoplasma Gondii MARGPRKHLKRIAAPHHWMLDKLTGHYAPRPSPGPHKLRESAPLVVLLRNRLRYALTYREVMMIVMQRLIKVDNKVRTDQCYPAGFMDVISIEKTKENFRMLFDTKGRFVPHPIREEEASYKLCRVKKVVVGPKGVPALITHDGRTMRYPHPSIKAHDCIRLDLNTGKIVDTLKFEAGNMAMVTGGHNVGRVGVIVHRERHLGGFDIIHLRDAKNNEFATRISNVFVIGKGEKAWISLPKEKGIRLSIMENRQVLLKKQQMNN
Ribosomal protein uS7 F 192 Toxoplasma Gondii MATEAKLFGRWSYDDVNVSDLSLVDYIAVKDKACVFVPHTAGRYQKKRFRKAMCPIVERLVNSMMMHGRNNGKKTLSVRIVRHAFEIIHLMTDKNPIQVFVNAVENGGPREDSTRIGSAGVVRRQAVDVSPLRRVNQAIYLICTGARLAAFRNIKTIAECLADEIMNCAKESSNAYAIKKKDEIERVAKANR
Ribosomal protein eS6 G 256 Toxoplasma Gondii MKLNLANPQAGMQKTVEVDDEKKLLPFFEKRMGAEVAGDSIGDEFKGYIFRISGGNDKQGFPMMQGVLVNHRVRLLFRKGMKCYRQRRTGEKKRKSVRGSIVGPDLAVLNLVLVKKGPETIPGLTDAERPRRLGPKRANNIRKLFNLSKDQDVRKYVVRRQIEGKKKTKAPKIQRLITKTRVQRKRAYLAKQRRSVIKSREEAKAYKDVLSAYKHELRKKRADVVAKKKAQAAAAPKPAEVKVVKAKAATAKKGGK
Ribosomal protein eS7 H 196 Toxoplasma Gondii MMNFKKKIVKPQGVEPTEIENEVAKCLFDIETSSQSDLKGDVRHLVISSVKEVEVPQGRKKAFVVFVPHAVYQKTVKKIQGRLVQELEKKLKKHVVLVAQRTMLPLDFKRKGLKVRPRSRTLTAVQDGMLEDIVSPTEIVGKRMRVRVDNTKMLKVFLDPRDKQKDNIEDKLETFAAVYKKLTNKDAVFSFPQHVY
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2017-07-05
Deposition Author(s): Gao, N. , Guo, Q. , Ji, Y. , Lai, D. , Li, Z. , Lun, Z. , Suo, X. , Xie, Y. , Zheng, L.