5XNL
Structure of stacked c2s2m2-type psii-lhcii supercomplex from pisum sativum
PDB DOI: 10.2210/pdb5xnl/pdb
Classification: MEMBRANE PROTEIN Organism(s): Vibrio Cholerae O139
Deposited: 2017-05-23 Deposition Author(s): Cao, P. , Chang, W.R. , Li, M. , Liu, Z.F. , Ma, J. , Su, X.D. , Wei, X.P. , Zhang, X.Z. , Zhu, D.J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.7 Å
Structure of stacked c2s2m2-type psii-lhcii supercomplex from pisum sativum
Cao, P. , Chang, W.R. , Li, M. , Liu, Z.F. , Ma, J. , Su, X.D. , Wei, X.P. , Zhang, X.Z. , Zhu, D.J.
Primary Citation of Related Structures: 5XNL
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Chlorophyll a-b binding protein 8, chloroplastic | 1 | 232 | Vibrio Cholerae O139 | RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK |
| Chlorophyll a-b binding protein 8, chloroplastic | 2 | 232 | Vibrio Cholerae O139 | RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK |
| Chlorophyll a-b binding protein 8, chloroplastic | G | 232 | Vibrio Cholerae O139 | RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK |
| Chlorophyll a-b binding protein 8, chloroplastic | N | 232 | Vibrio Cholerae O139 | RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK |
| Chlorophyll a-b binding protein 8, chloroplastic | Y | 232 | Vibrio Cholerae O139 | RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK |
| Chlorophyll a-b binding protein 8, chloroplastic | 5 | 232 | Vibrio Cholerae O139 | RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK |
| Chlorophyll a-b binding protein 8, chloroplastic | 6 | 232 | Vibrio Cholerae O139 | RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK |
| Photosystem II reaction center protein H | H | 73 | Vibrio Cholerae O139 | MATQTVENSSRSGPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGIAMALFAVFLSIILEIYNSSLLLDQISMN |
| Photosystem II reaction center protein I, PsbI | I | 36 | Vibrio Cholerae O139 | MLTLKLFVYTIVIFFVSLFIFGFLSNDPGRNPGREE |
| Photosystem II reaction center protein J | J | 40 | Vibrio Cholerae O139 | MANTTGRIPLWIIGTVAGIVVIGLIGLFFYGSYSGLGSSL |
| Photosystem II reaction center protein K | K | 61 | Vibrio Cholerae O139 | MLNIFSLVCICINSALYSSSFFLGKLPEAYAFLNPIVDFMPVIPLLFFLLAFVWQAAVSFR |
| Photosystem II reaction center protein L | L | 38 | Vibrio Cholerae O139 | MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN |
| Photosystem II reaction center protein M | M | 34 | Vibrio Cholerae O139 | MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD |
| Oxygen-evolving enhancer protein 1, chloroplastic | O | 248 | Vibrio Cholerae O139 | EGAPKRLTFDEIQSKTYLEVKGTGTANQCPTIDGGVDSFSFKPGKYNAKKLCLEPTSFTVKSEGVTKNTPLAFQNTKLMTRLTYTLDEIEGPFEVSADGSVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPDSFSGEFLVPSYRGSSFLDPKGRGASTGYDNAVALPAGGRGDEEELGKENNKSAASSKGKITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES |
| Oxygen-evolving enhancer protein 2, chloroplastic | P | 186 | Vibrio Cholerae O139 | AYGEAANVFGKAKTNTDYLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVKDGKLYICKAQAGDKRWFKGARKFVEDTASSFSVA |
| Oxygen-evolving enhancer protein 3 | Q | 148 | Vibrio Cholerae O139 | EAIPIKVGGPPPLSGGLPGTLNSDEARDLKLPLKERFFIQPLAPTEAAARTKESAKEIVAAKKFIDQKAWPFLQNDLRLRAGYLRYDLKTIISSKPKDQKQSLKELTDKLFQDISNLDHAAKIKSPSEAEKYYAIAVSTLNDVLSKIA |
| Light harvesting chlorophyll a/b-binding protein Lhcb4, CP29 | R | 246 | Vibrio Cholerae O139 | KPSRSAPTTDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFEDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS |
| Chlorophyll a-b binding protein, chloroplastic | 3 | 243 | Vibrio Cholerae O139 | RKSANPLRDVVAMGTSKFTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGLPDVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGA |
| Chlorophyll a-b binding protein, chloroplastic | 7 | 243 | Vibrio Cholerae O139 | RKSANPLRDVVAMGTSKFTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGLPDVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGA |
| Light harvesting chlorophyll a/b-binding protein Lhcb5, CP26 | S | 244 | Vibrio Cholerae O139 | ALFSKKKAAPPKKAVVSPVDDELAKWYGPDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPDDFAKYQAYELIHGRWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLIFAVIAEVVLVGGAEYYRIINGLNLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFANNLLTVLAGSAERAPTL |
| Photosystem II reaction center protein T | T | 35 | Vibrio Cholerae O139 | MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKNTK |
| Photosystem II reaction center protein W | W | 54 | Vibrio Cholerae O139 | LVDDRMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYASGLDEDEESGLSL |
| Photosystem II reaction center protein X | X | 86 | Vibrio Cholerae O139 | SIGRASSKSNGRFQVKASLKEKVVTGLTAAALTAQMVIPDVAEAATVSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKRGSQ |
| Photosystem II reaction center protein Z | Z | 62 | Vibrio Cholerae O139 | MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLIS |
| Light harvesting chlorophyll a/b-binding protein Lhcb6, CP24 | 4 | 210 | Vibrio Cholerae O139 | AASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFVNSTGEQGYPGGKFFDPLSLAGTIENGVYIPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL |
| Light harvesting chlorophyll a/b-binding protein Lhcb6, CP24 | 8 | 210 | Vibrio Cholerae O139 | AASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFVNSTGEQGYPGGKFFDPLSLAGTIENGVYIPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL |
| Photosystem II protein D1 | A | 344 | Vibrio Cholerae O139 | MTAILERRDSENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLA |
| Photosystem II CP47 reaction center protein | B | 507 | Vibrio Cholerae O139 | MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWNITGGTITNPGIWSYEGVAAAHIVFSGLCFLAAIWHWLYWDLEIFCDERTGKPSLDLPKIFGIHLFLAGVACFGFGAFHVTGLFGPGIWVSDPYGLTGRVQSVNPAWGVDGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGHVENQSLSEAWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRGDVPFRRAESKYSVEQVGVIVEFYGGELNGVTYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDLFAGIDPDLDAQVEFGAFQKLGDPTTRRGL |
| Photosystem II CP43 reaction center protein | C | 473 | Vibrio Cholerae O139 | MKTLYSLRRFYHVETLFNGTLALTGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGSFLLVFKAFYFGGIYDTWAPGGGDVRKITNFTLSPSILFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALAVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN |
| Photosystem II D2 protein | D | 353 | Vibrio Cholerae O139 | MTIALGKFTKDQNDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDLTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMATQDQPHENLIFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 83 | Vibrio Cholerae O139 | MSGSTGERSFADIITSIRYWIIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTETRQGIPLITGRFDSLEQLDEFSRSF |
| Cytochrome b559 subunit beta, PsbF | F | 39 | Vibrio Cholerae O139 | MTIDRTYPIFTVRWLAVHGLAVPTVFFLGSISAMQFIQR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2017-05-23 Deposition Author(s): Cao, P. , Chang, W.R. , Li, M. , Liu, Z.F. , Ma, J. , Su, X.D. , Wei, X.P. , Zhang, X.Z. , Zhu, D.J.