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FASTA Sequence PDB Format mmCIF Format
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5W2M

Apobec3f catalytic domain complex with a single-stranded dna

PDB DOI: 10.2210/pdb5w2m/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2017-06-06
Deposition Author(s): Chen, X.S. , Fang, Y. , Li, S.-X. , Wolfe, A. , Xiao, X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.7 Å

5w2m
Literature

Apobec3f catalytic domain complex with a single-stranded dna

Chen, X.S. , Fang, Y. , Li, S.-X. , Wolfe, A. , Xiao, X.

Primary Citation of Related Structures: 5W2M


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA dC->dU-editing enzyme APOBEC-3F A 184 Homo Sapiens , Synthetic Construct NPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE
DNA dC->dU-editing enzyme APOBEC-3F B 184 Homo Sapiens , Synthetic Construct NPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE
DNA dC->dU-editing enzyme APOBEC-3F C 184 Homo Sapiens , Synthetic Construct NPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE
DNA dC->dU-editing enzyme APOBEC-3F D 184 Homo Sapiens , Synthetic Construct NPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE
DNA dC->dU-editing enzyme APOBEC-3F J 184 Homo Sapiens , Synthetic Construct NPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE
DNA dC->dU-editing enzyme APOBEC-3F K 184 Homo Sapiens , Synthetic Construct NPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE
DNA dC->dU-editing enzyme APOBEC-3F L 184 Homo Sapiens , Synthetic Construct NPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE
DNA dC->dU-editing enzyme APOBEC-3F M 184 Homo Sapiens , Synthetic Construct NPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3') e 10 NA TTTTTTTTTT
DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3') n 10 NA TTTTTTTTTT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-06-06
Deposition Author(s): Chen, X.S. , Fang, Y. , Li, S.-X. , Wolfe, A. , Xiao, X.