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FASTA Sequence PDB Format mmCIF Format
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5VI0

Pseudomonas fluorescens alkylpurine dna glycosylase alkc bound to dna containing an abasic site analog

PDB DOI: 10.2210/pdb5vi0/pdb

Classification: HYDROLASE/DNA
Organism(s): Pseudomonas Fluorescens , Synthetic Construct

Deposited: 2017-04-13
Deposition Author(s): Eichman, B.F. , Shi, R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.396 Å

5vi0
Literature

Pseudomonas fluorescens alkylpurine dna glycosylase alkc bound to dna containing an abasic site analog

Eichman, B.F. , Shi, R.

Primary Citation of Related Structures: 5VI0


Proteins
Molecule Chains Sequence Length Organism Sequence
alkylpurine DNA glycosylase AlkC A 369 Pseudomonas Fluorescens , Synthetic Construct GPGSMTDQAAPALKEIFNVERLQHIASEMTAVYPAFDAKGFLKHAKAGLAELSVMQRMARVSESLHAVIPLDYPQTLTLLYALAPRLNSGFVSLFLPHYVASYGRDDFKRSMAALKYFTTFGSAEFAIRHFLLHDFQRTLAVMQAWSQDDNEHVRRLASEGSRPRLPWSFRLAEVQADPELCASILDHLKADSSLYVRKSVANHLNDITKDHPEWVLSLIEGWNLENPHTAWIARHALRSLIKQGNTRALTLMGAGAKAEVKIHHLMVTPAVINLGERINLSFTLESTAPAPQKLVVDYAIDYVKSTGHGAAKVFKLKAFSLGAGAQQHIRREQHIRDMTTRKHYPGRHVVHVLVNGERLGSAEFELRA
alkylpurine DNA glycosylase AlkC B 369 Pseudomonas Fluorescens , Synthetic Construct GPGSMTDQAAPALKEIFNVERLQHIASEMTAVYPAFDAKGFLKHAKAGLAELSVMQRMARVSESLHAVIPLDYPQTLTLLYALAPRLNSGFVSLFLPHYVASYGRDDFKRSMAALKYFTTFGSAEFAIRHFLLHDFQRTLAVMQAWSQDDNEHVRRLASEGSRPRLPWSFRLAEVQADPELCASILDHLKADSSLYVRKSVANHLNDITKDHPEWVLSLIEGWNLENPHTAWIARHALRSLIKQGNTRALTLMGAGAKAEVKIHHLMVTPAVINLGERINLSFTLESTAPAPQKLVVDYAIDYVKSTGHGAAKVFKLKAFSLGAGAQQHIRREQHIRDMTTRKHYPGRHVVHVLVNGERLGSAEFELRA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*TP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*T)-3') c 11 NA TGTCCANGTCT
DNA (5'-D(*TP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*T)-3') f 11 NA TGTCCANGTCT
DNA (5'-D(*AP*AP*GP*AP*CP*TP*TP*GP*GP*AP*C)-3') d 11 NA AAGACTTGGAC
DNA (5'-D(*AP*AP*GP*AP*CP*TP*TP*GP*GP*AP*C)-3') e 11 NA AAGACTTGGAC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-04-13
Deposition Author(s): Eichman, B.F. , Shi, R.