Pseudomonas fluorescens alkylpurine dna glycosylase alkc bound to dna containing an oxocarbenium-intermediate analog
PDB DOI: 10.2210/pdb5vhv/pdb
Classification: HYDROLASE/DNA Organism(s): Pseudomonas Fluorescens , Synthetic Construct
Deposited: 2017-04-13 Deposition Author(s): Eichman, B.F. , Shi, R.
Pseudomonas fluorescens alkylpurine dna glycosylase alkc bound to dna containing an oxocarbenium-intermediate analog
Primary Citation of Related Structures: 5VHV
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
alkylpurine DNA glycosylase AlkC | A | 361 | Pseudomonas Fluorescens , Synthetic Construct | AAPALKEIFNVERLQHIASEMTAVYPAFDAKGFLKHAKAGLAELSVMQRMARVSESLHAVIPLDYPQTLTLLYALAPRLNSGFVSLFLPHYVASYGRDDFKRSMAALKYFTTFGSAEFAIRHFLLHDFQRTLAVMQAWSQDDNEHVRRLASEGSRPRLPWSFRLAEVQADPELCASILDHLKADSSLYVRKSVANHLNDITKDHPEWVLSLIEGWNLENPHTAWIARHALRSLIKQGNTRALTLMGAGAKAEVKIHHLMVTPAVINLGERINLSFTLESTAPAPQKLVVDYAIDYVKSTGHGAAKVFKLKAFSLGAGAQQHIRREQHIRDMTTRKHYPGRHVVHVLVNGERLGSAEFELRA |
alkylpurine DNA glycosylase AlkC | B | 361 | Pseudomonas Fluorescens , Synthetic Construct | AAPALKEIFNVERLQHIASEMTAVYPAFDAKGFLKHAKAGLAELSVMQRMARVSESLHAVIPLDYPQTLTLLYALAPRLNSGFVSLFLPHYVASYGRDDFKRSMAALKYFTTFGSAEFAIRHFLLHDFQRTLAVMQAWSQDDNEHVRRLASEGSRPRLPWSFRLAEVQADPELCASILDHLKADSSLYVRKSVANHLNDITKDHPEWVLSLIEGWNLENPHTAWIARHALRSLIKQGNTRALTLMGAGAKAEVKIHHLMVTPAVINLGERINLSFTLESTAPAPQKLVVDYAIDYVKSTGHGAAKVFKLKAFSLGAGAQQHIRREQHIRDMTTRKHYPGRHVVHVLVNGERLGSAEFELRA |
Nucleic Acids / Hybrid | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
DNA (5'-D(*TP*GP*TP*CP*CP*AP*(NRI)P*GP*TP*CP*T)-3') | c | 11 | NA | TGTCCAXGTCT |
DNA (5'-D(*TP*GP*TP*CP*CP*AP*(NRI)P*GP*TP*CP*T)-3') | e | 11 | NA | TGTCCAXGTCT |
DNA (5'-D(*AP*AP*GP*AP*CP*TP*TP*GP*GP*AP*C)-3') | d | 11 | NA | AAGACTTGGAC |
DNA (5'-D(*AP*AP*GP*AP*CP*TP*TP*GP*GP*AP*C)-3') | f | 11 | NA | AAGACTTGGAC |
Method: X-RAY DIFFRACTION
Deposited Date: 2017-04-13 Deposition Author(s): Eichman, B.F. , Shi, R.