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FASTA Sequence PDB Format mmCIF Format
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5VCJ

Structure of alpha-galactosylphytosphingosine bound by cd1d and in complex with the va14vb8.2 tcr

PDB DOI: 10.2210/pdb5vcj/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Mus Musculus

Deposited: 2017-03-31
Deposition Author(s): Wang, J. , Zajonc, D.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.16 Å

5vcj
Literature

Structure of alpha-galactosylphytosphingosine bound by cd1d and in complex with the va14vb8.2 tcr

Wang, J. , Zajonc, D.M.

Primary Citation of Related Structures: 5VCJ


Proteins
Molecule Chains Sequence Length Organism Sequence
Antigen-presenting glycoprotein CD1d1 A 285 Homo Sapiens , Mus Musculus SEAQQKNYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQGKLSNQQWEKLQHMFQVYRVSFTRDIQELVKMMSPKEDYPIEIQLSAGCEMYPGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGTSATVQMLLNDTCPLFVRGLLEAGKSDLEKQEKPVAWLSSVPSSAHGHRQLVCHVSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAGEEAGLACRVKHSSLGGQDIILYWHHHHHH
Beta-2-microglobulin B 99 Homo Sapiens , Mus Musculus IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHASMAEPKTVYWDRDM
Chimeric TCR Valpha14/Jalpha18 chain (mouse variable domain, human constant domain) C 209 Homo Sapiens , Mus Musculus MKTQVEQSPQSLVVRQGENCVLQCNYSVTPDNHLRWFKQDTGKGLVSLTVLVDQKDKTSNGRYSATLDKDAKHSTLHITATLLDDTATYICVVGDRGSALGRLHFGAGTQLIVIPDIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESS
Chimeric TCR Vbeta8.2 chain (mouse variable domain, human constant domain) D 241 Homo Sapiens , Mus Musculus MEAAVTQSPRNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGDEGYTQYFGPGTRLLVLEDLRNVTPPKVSLFEPSKAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-03-31
Deposition Author(s): Wang, J. , Zajonc, D.M.