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FASTA Sequence PDB Format mmCIF Format
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5U1C

Structure of tetrameric hiv-1 strand transfer complex intasome

PDB DOI: 10.2210/pdb5u1c/pdb

Classification: VIRAL PROTEIN
Organism(s): Human Immunodeficiency Virus 1 , Sulfolobus Solfataricus , Synthetic Construct

Deposited: 2016-11-28
Deposition Author(s): Lyumkis, D. , Passos, D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

5u1c
Literature

Structure of tetrameric hiv-1 strand transfer complex intasome

Lyumkis, D. , Passos, D.

Primary Citation of Related Structures: 5U1C


Proteins
Molecule Chains Sequence Length Organism Sequence
HIV-1 Integrase, Sso7d chimera A 383 Human Immunodeficiency Virus 1 , Sulfolobus Solfataricus , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMATVKFKYKGEEKEVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQKKGGGGGGGGGGGFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIQSMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
HIV-1 Integrase, Sso7d chimera B 383 Human Immunodeficiency Virus 1 , Sulfolobus Solfataricus , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMATVKFKYKGEEKEVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQKKGGGGGGGGGGGFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIQSMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
HIV-1 Integrase, Sso7d chimera C 383 Human Immunodeficiency Virus 1 , Sulfolobus Solfataricus , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMATVKFKYKGEEKEVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQKKGGGGGGGGGGGFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIQSMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
HIV-1 Integrase, Sso7d chimera D 383 Human Immunodeficiency Virus 1 , Sulfolobus Solfataricus , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMATVKFKYKGEEKEVDISKIKKVWRVGKMISFTYDEGGGKTGRGAVSEKDAPKELLQMLEKQKKGGGGGGGGGGGFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIQSMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (11-MER) g 11 NA GTACGCTGACT
DNA (11-MER) h 11 NA GTACGCTGACT
DNA (23-MER) e 23 NA ACTGCTAGAGATTTTCCACACTG
DNA (23-MER) i 23 NA ACTGCTAGAGATTTTCCACACTG
DNA (37-MER) f 37 NA CAGTGTGGAAAATCTCTAGCAGTTACAGTCAGCGTAC
DNA (37-MER) j 37 NA CAGTGTGGAAAATCTCTAGCAGTTACAGTCAGCGTAC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2016-11-28
Deposition Author(s): Lyumkis, D. , Passos, D.