5T0U
Ctcf znf2-7 and dna complex structure
PDB DOI: 10.2210/pdb5t0u/pdb
Classification: TRANSCRIPTION REGULATOR/DNA Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2016-08-16 Deposition Author(s): Cheng, X. , Hashimoto, H. , Wang, D.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.199 Å
Ctcf znf2-7 and dna complex structure
Cheng, X. , Hashimoto, H. , Wang, D.
Primary Citation of Related Structures: 5T0U
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Transcriptional repressor CTCF | A | 177 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | PLGSTHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQ |
| Transcriptional repressor CTCF | D | 177 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | PLGSTHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQ |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(*CP*CP*TP*CP*AP*CP*TP*AP*GP*CP*GP*CP*CP*CP*CP*CP*TP*GP*CP*TP*GP*GP*C)-3') | b | 23 | NA | CCTCACTAGCGCCCCCTGCTGGC |
| DNA (5'-D(*CP*CP*TP*CP*AP*CP*TP*AP*GP*CP*GP*CP*CP*CP*CP*CP*TP*GP*CP*TP*GP*GP*C)-3') | e | 23 | NA | CCTCACTAGCGCCCCCTGCTGGC |
| DNA (5'-D(*GP*CP*CP*AP*GP*CP*AP*GP*GP*GP*GP*GP*CP*GP*CP*TP*AP*GP*TP*GP*AP*GP*G)-3') | c | 23 | NA | GCCAGCAGGGGGCGCTAGTGAGG |
| DNA (5'-D(*GP*CP*CP*AP*GP*CP*AP*GP*GP*GP*GP*GP*CP*GP*CP*TP*AP*GP*TP*GP*AP*GP*G)-3') | f | 23 | NA | GCCAGCAGGGGGCGCTAGTGAGG |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2016-08-16 Deposition Author(s): Cheng, X. , Hashimoto, H. , Wang, D.