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5SWW

Crystal structure of human apobec3a complexed with ssdna

PDB DOI: 10.2210/pdb5sww/pdb

Classification: Hydrolase/DNA
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2016-08-09
Deposition Author(s): Aihara, H. , Banerjee, S. , Kurahashi, K. , Shi, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.151 Å

5sww
Literature

Crystal structure of human apobec3a complexed with ssdna

Aihara, H. , Banerjee, S. , Kurahashi, K. , Shi, K.

Primary Citation of Related Structures: 5SWW


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA dC->dU-editing enzyme APOBEC-3A A 204 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GPLGSPEFMEASPASGPRHLMDPHIFTSNFNNGIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGFYGRHAALRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQALSGRLRAILQN
DNA dC->dU-editing enzyme APOBEC-3A B 204 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GPLGSPEFMEASPASGPRHLMDPHIFTSNFNNGIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGFYGRHAALRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQALSGRLRAILQN
DNA dC->dU-editing enzyme APOBEC-3A C 204 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GPLGSPEFMEASPASGPRHLMDPHIFTSNFNNGIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGFYGRHAALRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQALSGRLRAILQN
DNA dC->dU-editing enzyme APOBEC-3A D 204 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GPLGSPEFMEASPASGPRHLMDPHIFTSNFNNGIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGFYGRHAALRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQALSGRLRAILQN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA 15-Mer e 15 NA AAAAAAATCGGGAAA
DNA 15-Mer f 15 NA AAAAAAATCGGGAAA
DNA 15-Mer g 15 NA AAAAAAATCGGGAAA
DNA 15-Mer h 15 NA AAAAAAATCGGGAAA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-08-09
Deposition Author(s): Aihara, H. , Banerjee, S. , Kurahashi, K. , Shi, K.