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5OMF

Closed, ternary structure of kod dna polymerase

PDB DOI: 10.2210/pdb5omf/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Thermococcus Kodakarensis (Strain Atcc Baa-918 / Jcm 12380 / Kod1) , Synthetic Construct

Deposited: 2017-07-31
Deposition Author(s): Betz, K. , Diederichs, K. , Kropp, H.M. , Marx, A. , Wirth, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.092 Å

5omf
Literature

Closed, ternary structure of kod dna polymerase

Betz, K. , Diederichs, K. , Kropp, H.M. , Marx, A. , Wirth, J.

Primary Citation of Related Structures: 5OMF


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase,DNA polymerase,DNA polymerase A 774 Thermococcus Kodakarensis (Strain Atcc Baa-918 / Jcm 12380 / Kod1) , Synthetic Construct MILDTDYITEDGKPVIRIFKKENGEFKIEYDRTFEPYFYALLKDDSAIEEVKKITAERHGTVVTVKRVEKVQKKFLGRPVEVWKLYFTHPQDVPAIRDKIREHPAVIDIYEYDIPFAKRYLIDKGLVPMEGDEELKMLAFAIATLYHEGEEFAEGPILMISYADEEGARVITWKNVDLPYVDVVSTEREMIKRFLRVVKEKDPDVLITYNGDNFDFAYLKKRCEKLGINFALGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGQPKEKVYAEEITTAWETGENLERVARYSMEDAKVTYELGKEFLPMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAYERNELAPNKPDEKELARRRQSYEGGYVKEPERGLWENIVYLDFRSLYPSIIITHNVSPDTLNREGCKEYDVAPQVGHRFCKDFPGFIPSLLGDLLEERQKIKKKMKATIDPIERKLLDYRQRAIKILANSYYGYYGYARARWYCKECAESVTAWGREYITMTIKEIEEKYGFKVIYSDTDGFFATIPGADAETVKKKAMEFLKYINAKLPGALELEYEGFYKRGFFVTKKKYAVIDEEGKITTRGLEIVRRDWSEIAKETQARVLEALLKDGDVEKAVRIVKEVTEKLSKYEVPPEKLVIHEQITRDLKDYKATGPHVAVAKRLAARGVKIRPGTVISYIVLKGSGRIGDRAIPFDEFDPTKHKYDAEYYIENQVLPAVERILRAFGYRKEDLRYQKTRQVGLSAWLKPKGT

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*CP*TP*GP*TP*GP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3') t 16 NA AACTGTGGCCGTGGTC
DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*CP*AP*C)-3') p 16 NA GACCACGGCCACAGTT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-07-31
Deposition Author(s): Betz, K. , Diederichs, K. , Kropp, H.M. , Marx, A. , Wirth, J.