5NNU
Kshv uracil-dna glycosylase, product complex with dsdna exhibiting duplex nucleotide flipping
PDB DOI: 10.2210/pdb5nnu/pdb
Classification: HYDROLASE Organism(s): Human Herpesvirus 8 , Synthetic Construct
Deposited: 2017-04-10 Deposition Author(s): Bagneris, C. , Barrett, T. , Earl, C. , Savva, R.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.97 Å
Kshv uracil-dna glycosylase, product complex with dsdna exhibiting duplex nucleotide flipping
Bagneris, C. , Barrett, T. , Earl, C. , Savva, R.
Primary Citation of Related Structures: 5NNU
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA containing an abasic site | s | 11 | NA | AATGTXATCTT |
| DNA containing an abasic site | u | 11 | NA | AATGTXATCTT |
| DNA containing an abasic site | w | 11 | NA | AATGTXATCTT |
| DNA containing an abasic site | y | 11 | NA | AATGTXATCTT |
| DNA | t | 11 | NA | AAGATAACATT |
| DNA | v | 11 | NA | AAGATAACATT |
| DNA | x | 11 | NA | AAGATAACATT |
| DNA | z | 11 | NA | AAGATAACATT |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Uracil-DNA glycosylase | A | 240 | Human Herpesvirus 8 , Synthetic Construct | SASGVDDRDLLLAPKWISFLSLSSFLKQKLLSLLRQIRELRLTTTVYPPQDKLMWWSHCCDPEDIKVVILGQDPYHKGQATGLAFSVDPQCQVPPSLRSIFRELEASVPNFSTPSHGCLDSWARQGVLLLNTVLTVEKGRAGSHEGLGWDWFTSFIISSISSKLEHCVFLLWGRKAIDRTPLINAQKHLVLTAQHPSPLASLGGRHSRWPRFQGCNHFNLANDYLTRHRRETVDWGLLEQ |
| Uracil-DNA glycosylase | B | 240 | Human Herpesvirus 8 , Synthetic Construct | SASGVDDRDLLLAPKWISFLSLSSFLKQKLLSLLRQIRELRLTTTVYPPQDKLMWWSHCCDPEDIKVVILGQDPYHKGQATGLAFSVDPQCQVPPSLRSIFRELEASVPNFSTPSHGCLDSWARQGVLLLNTVLTVEKGRAGSHEGLGWDWFTSFIISSISSKLEHCVFLLWGRKAIDRTPLINAQKHLVLTAQHPSPLASLGGRHSRWPRFQGCNHFNLANDYLTRHRRETVDWGLLEQ |
| Uracil-DNA glycosylase | D | 240 | Human Herpesvirus 8 , Synthetic Construct | SASGVDDRDLLLAPKWISFLSLSSFLKQKLLSLLRQIRELRLTTTVYPPQDKLMWWSHCCDPEDIKVVILGQDPYHKGQATGLAFSVDPQCQVPPSLRSIFRELEASVPNFSTPSHGCLDSWARQGVLLLNTVLTVEKGRAGSHEGLGWDWFTSFIISSISSKLEHCVFLLWGRKAIDRTPLINAQKHLVLTAQHPSPLASLGGRHSRWPRFQGCNHFNLANDYLTRHRRETVDWGLLEQ |
| Uracil-DNA glycosylase | E | 240 | Human Herpesvirus 8 , Synthetic Construct | SASGVDDRDLLLAPKWISFLSLSSFLKQKLLSLLRQIRELRLTTTVYPPQDKLMWWSHCCDPEDIKVVILGQDPYHKGQATGLAFSVDPQCQVPPSLRSIFRELEASVPNFSTPSHGCLDSWARQGVLLLNTVLTVEKGRAGSHEGLGWDWFTSFIISSISSKLEHCVFLLWGRKAIDRTPLINAQKHLVLTAQHPSPLASLGGRHSRWPRFQGCNHFNLANDYLTRHRRETVDWGLLEQ |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2017-04-10 Deposition Author(s): Bagneris, C. , Barrett, T. , Earl, C. , Savva, R.