5NJT
Structure of the bacillus subtilis hibernating 100s ribosome reveals the basis for 70s dimerization.
PDB DOI: 10.2210/pdb5njt/pdb
Classification: TRANSLATION Organism(s): Bacillus Subtilis Subsp. Subtilis Str. 168
Deposited: 2017-03-29 Deposition Author(s): Abdelshahid, M. , Arenz, S. , Bange, G. , Beckert, B. , Beckmann, R. , Berninghausen, O. , Schaefer, H. , Steinchen, W. , Turgay, K. , Wilson, D.N.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.8 Å
Structure of the bacillus subtilis hibernating 100s ribosome reveals the basis for 70s dimerization.
Abdelshahid, M. , Arenz, S. , Bange, G. , Beckert, B. , Beckmann, R. , Berninghausen, O. , Schaefer, H. , Steinchen, W. , Turgay, K. , Wilson, D.N.
Primary Citation of Related Structures: 5NJT
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L6 | A | 175 | Bacillus Subtilis Subsp. Subtilis Str. 168 | SRVGKKLLEIPSDVTVTLNDNNTVAVKGPKGELTRTFHPDMEIKVEDNVLTVARPSDQKEHRALHGTTRSLLGNMVEGVSKGFERGLELVGVGYRASKSGNKLVLNVGYSHPVEIVPEEGIEIEVPSQTKVVVKGTDKERVGAIAANIRAVRSPEPYKGKGIRYEGEVVRRKEGK |
| 50S ribosomal protein L20 | J | 117 | Bacillus Subtilis Subsp. Subtilis Str. 168 | PRVKGGTVTRKRRKKVLKLAKGYFGSKHTLYKVANQQVMKSGNYAFRDRRQKKRDFRKLWITRINAAARMNGLSYSRLMHGLKLSGIEVNRKMLADLAVNDLTAFNQLADAAKAQLN |
| 50S ribosomal protein L21 | K | 101 | Bacillus Subtilis Subsp. Subtilis Str. 168 | YAIIKTGGKQIKVEEGQTVYIEKLAAEAGETVTFEDVLFVGGDNVKVGNPTVEGATVTAKVEKQGRAKKITVFRYKPKKNVHKKQGHRQPYTKVTIEKINA |
| 50S ribosomal protein L22 | L | 109 | Bacillus Subtilis Subsp. Subtilis Str. 168 | QAKAVARTVRIAPRKARLVMDLIRGKQVGEAVSILNLTPRAASPIIEKVLKSAIANAEHNYEMDANNLVISQAFVDEGPTLKRFRPRAMGRASQINKRTSHITIVVSEK |
| 50S ribosomal protein L23 | M | 93 | Bacillus Subtilis Subsp. Subtilis Str. 168 | MKDPRDVLKRPVITERSADLMTEKKYTFEVDVRANKTEVKDAVESIFGVKVDKVNIMNYKGKSKRVGRYTGMTSRRRKAIVKLTADSKEIEIF |
| 50S ribosomal protein L24 | N | 100 | Bacillus Subtilis Subsp. Subtilis Str. 168 | HVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKPTQANPQGGISNQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKKVRVAKKSGQVL |
| 50S ribosomal protein L27 | O | 82 | Bacillus Subtilis Subsp. Subtilis Str. 168 | SKKGVGSTKNGRDSEAKRLGAKRADGQFVTGGSILYRQRGTKIYPGENVGRGGDDTLFAKIDGTVKFERFGRDRKKVSVYPV |
| 50S ribosomal protein L32 | P | 54 | Bacillus Subtilis Subsp. Subtilis Str. 168 | AVPFRRTSKMKKRLRRTHFKLNVPGMTECPSCGEMKLSHRVCKACGSYNGKDIN |
| 50S ribosomal protein L33 1 | Q | 48 | Bacillus Subtilis Subsp. Subtilis Str. 168 | MRVNITLACTECGERNYISKKNKRNNPDRVEFKKYCPRDKKSTLHRET |
| 50S ribosomal protein L34 | R | 44 | Bacillus Subtilis Subsp. Subtilis Str. 168 | MKRTFQPNNRKRSKVHGFRSRMSSKNGRLVLARRRRKGRKVLSA |
| 50S ribosomal protein L35 | S | 64 | Bacillus Subtilis Subsp. Subtilis Str. 168 | PKMKTHRGSAKRFKKTGSGKLKRSHAYTSHLFANKSQKQKRKLRKSAVVSAGDFKRIKQMLANI |
| 50S ribosomal protein L10 | B | 123 | Bacillus Subtilis Subsp. Subtilis Str. 168 | AIETKKVVVEEIASKLKESKSTIIVDYRGLNVSEVTELRKQLREANVEFKVYKNTMTRRAVEQAELNGLNDFLTGPNAIAFSTEDVVAPAKVLNDFAKNHEALEIKAGVIEGKVSTVEEVKAL |
| 50S ribosomal protein L36 | T | 36 | Bacillus Subtilis Subsp. Subtilis Str. 168 | KVRPSVKPICEKCKVIRRKGKVMVICENPKHKQKQG |
| 50S ribosomal protein L28 | U | 58 | Bacillus Subtilis Subsp. Subtilis Str. 168 | RKCVITGKKTTAGNNRSHAMNASKRTWGANLQKVRILVNGKPKKVYVSARALKSGKVE |
| 50S ribosomal protein L29 | V | 65 | Bacillus Subtilis Subsp. Subtilis Str. 168 | MKANEIRDLTTAEIEQKVKSLKEELFNLRFQLATGQLENTARIREVRKAIARMKTVIREREIAAN |
| 50S ribosomal protein L30 | W | 58 | Bacillus Subtilis Subsp. Subtilis Str. 168 | AKLEITLKRSVIGRPEDQRVTVRTLGLKKTNQTVVHEDNAAIRGMINKVSHLVSVKEQ |
| Ribosome hibernation promotion factor | X | 104 | Bacillus Subtilis Subsp. Subtilis Str. 168 | MNYNIRGENIEVTPALKDHVERKIGKLERYFDHSVDADVNVNLKFYNDKESKVEVTIPMTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTKVNRKFREQES |
| 50S ribosomal protein L31 | Y | 64 | Bacillus Subtilis Subsp. Subtilis Str. 168 | MKAGIHPNFKKATVKCACGNEFETGSVKEEVRVEICSECHPFYTGRQKFASADGRVDRFNKKYG |
| 50S ribosomal protein L5 | Z | 178 | Bacillus Subtilis Subsp. Subtilis Str. 168 | NRLKEKYNKEIAPALMTKFNYDSVMQVPKIEKIVINMGVGDAVQNAKAIDSAVEELTFIAGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGERMYDFLDKLISVSLPRVRDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVTKVRGMDIVIVTTANTDEEARELLTQVGMPFQK |
| 30S ribosomal protein S3 | C | 210 | Bacillus Subtilis Subsp. Subtilis Str. 168 | GQKVNPVGLRIGVIRDWESKWYAGKDYADFLHEDLKIREYISKRLSDASVSKVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINILEIKRADLDAQLVADNIARQLENRVSFRRAQKQQIQRTMRAGAQGVKTMVSGRLGGADIARSEYYSEGTVPLHTLRADIDYATSEADTTYGKLGVKVWIYRGEVLPTKK |
| 30S ribosomal protein S4 | D | 199 | Bacillus Subtilis Subsp. Subtilis Str. 168 | ARYTGPSWKLSRRLGISLSGTGKELEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRHMYGVNERQFRTLFDKAGKLAGKHGENFMILLDSRLDNVVYKLGLARTRRQARQLVNHGHILVDGSRVDIPSYLVKPGQTIGVREKSRNLSIIKESVEVNNFVPEYLTFDAEKLEGTFTRLPERSELAPEINEALIVEFYSR |
| 30S ribosomal protein S5 | E | 165 | Bacillus Subtilis Subsp. Subtilis Str. 168 | RRIDPSKLELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEVPMVGTTIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVADILSKSLGSNTPINMIRATLQGLSELKRAEDVAKLRGKSVEELLG |
| 30S ribosomal protein S6 | F | 95 | Bacillus Subtilis Subsp. Subtilis Str. 168 | MRKYEVMYIIRPNIDEESKKAVIERFNNVLTSNGAEITGTKDWGKRRLAYEINDFRDGFYQIVNVQSDAAAVQEFDRLAKISDDIIRHIVVKEEE |
| 30S ribosomal protein S7 | G | 153 | Bacillus Subtilis Subsp. Subtilis Str. 168 | KGPVAKRDVLPDPIYNSKLVSRLINKMMIDGKKGKSQTILYKSFDIIKERTGNDAMEVFEQALKNIMPVLEVKARRVGGANYQVPVEVRPERRTTLGLRWLVNYARLRGEKTMEERLANEILDAANNTGAAVKKREDTHKMAEANKAFAHYRW |
| 30S ribosomal protein S8 | H | 131 | Bacillus Subtilis Subsp. Subtilis Str. 168 | VMTDPIADMLTRIRNANMVRHEKLEIPASKLKREIAEILKREGFIRDVEFVEDSKQGIIRVFLKYGQNNERVITGLKRISKPGLRVYAKSNEVPRVLNGLGIAIISTSQGVLTDKEARAKQAGGEVLAYVW |
| 30S ribosomal protein S9 | I | 130 | Bacillus Subtilis Subsp. Subtilis Str. 168 | MAQVQYYGTGRRKSSVARVRLVPGEGRIVVNNREISEHIPSAALIEDIKQPLTLTETAGTYDVLVNVHGGGLSGQAGAIRHGIARALLEADPEYRTTLKRAGLLTRDARMKERKKYGLKGARRAPQFSKR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2017-03-29 Deposition Author(s): Abdelshahid, M. , Arenz, S. , Bange, G. , Beckert, B. , Beckmann, R. , Berninghausen, O. , Schaefer, H. , Steinchen, W. , Turgay, K. , Wilson, D.N.