5NJT
Structure of the bacillus subtilis hibernating 100s ribosome reveals the basis for 70s dimerization.
PDB DOI: 10.2210/pdb5njt/pdb
Classification: TRANSLATION Organism(s): Ligusticum Chuanxiong
Deposited: 2017-03-29 Deposition Author(s): Abdelshahid, M. , Arenz, S. , Bange, G. , Beckert, B. , Beckmann, R. , Berninghausen, O. , Schaefer, H. , Steinchen, W. , Turgay, K. , Wilson, D.N.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.8 Å
Structure of the bacillus subtilis hibernating 100s ribosome reveals the basis for 70s dimerization.
Abdelshahid, M. , Arenz, S. , Bange, G. , Beckert, B. , Beckmann, R. , Berninghausen, O. , Schaefer, H. , Steinchen, W. , Turgay, K. , Wilson, D.N.
Primary Citation of Related Structures: 5NJT
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L6 | A | 175 | Ligusticum Chuanxiong | SRVGKKLLEIPSDVTVTLNDNNTVAVKGPKGELTRTFHPDMEIKVEDNVLTVARPSDQKEHRALHGTTRSLLGNMVEGVSKGFERGLELVGVGYRASKSGNKLVLNVGYSHPVEIVPEEGIEIEVPSQTKVVVKGTDKERVGAIAANIRAVRSPEPYKGKGIRYEGEVVRRKEGK |
| 50S ribosomal protein L20 | J | 117 | Ligusticum Chuanxiong | PRVKGGTVTRKRRKKVLKLAKGYFGSKHTLYKVANQQVMKSGNYAFRDRRQKKRDFRKLWITRINAAARMNGLSYSRLMHGLKLSGIEVNRKMLADLAVNDLTAFNQLADAAKAQLN |
| 50S ribosomal protein L21 | K | 101 | Ligusticum Chuanxiong | YAIIKTGGKQIKVEEGQTVYIEKLAAEAGETVTFEDVLFVGGDNVKVGNPTVEGATVTAKVEKQGRAKKITVFRYKPKKNVHKKQGHRQPYTKVTIEKINA |
| 50S ribosomal protein L22 | L | 109 | Ligusticum Chuanxiong | QAKAVARTVRIAPRKARLVMDLIRGKQVGEAVSILNLTPRAASPIIEKVLKSAIANAEHNYEMDANNLVISQAFVDEGPTLKRFRPRAMGRASQINKRTSHITIVVSEK |
| 50S ribosomal protein L23 | M | 93 | Ligusticum Chuanxiong | MKDPRDVLKRPVITERSADLMTEKKYTFEVDVRANKTEVKDAVESIFGVKVDKVNIMNYKGKSKRVGRYTGMTSRRRKAIVKLTADSKEIEIF |
| 50S ribosomal protein L24 | N | 100 | Ligusticum Chuanxiong | HVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKPTQANPQGGISNQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKKVRVAKKSGQVL |
| 50S ribosomal protein L27 | O | 82 | Ligusticum Chuanxiong | SKKGVGSTKNGRDSEAKRLGAKRADGQFVTGGSILYRQRGTKIYPGENVGRGGDDTLFAKIDGTVKFERFGRDRKKVSVYPV |
| 50S ribosomal protein L32 | P | 54 | Ligusticum Chuanxiong | AVPFRRTSKMKKRLRRTHFKLNVPGMTECPSCGEMKLSHRVCKACGSYNGKDIN |
| 50S ribosomal protein L33 1 | Q | 48 | Ligusticum Chuanxiong | MRVNITLACTECGERNYISKKNKRNNPDRVEFKKYCPRDKKSTLHRET |
| 50S ribosomal protein L34 | R | 44 | Ligusticum Chuanxiong | MKRTFQPNNRKRSKVHGFRSRMSSKNGRLVLARRRRKGRKVLSA |
| 50S ribosomal protein L35 | S | 64 | Ligusticum Chuanxiong | PKMKTHRGSAKRFKKTGSGKLKRSHAYTSHLFANKSQKQKRKLRKSAVVSAGDFKRIKQMLANI |
| 50S ribosomal protein L10 | B | 123 | Ligusticum Chuanxiong | AIETKKVVVEEIASKLKESKSTIIVDYRGLNVSEVTELRKQLREANVEFKVYKNTMTRRAVEQAELNGLNDFLTGPNAIAFSTEDVVAPAKVLNDFAKNHEALEIKAGVIEGKVSTVEEVKAL |
| 50S ribosomal protein L36 | T | 36 | Ligusticum Chuanxiong | KVRPSVKPICEKCKVIRRKGKVMVICENPKHKQKQG |
| 50S ribosomal protein L28 | U | 58 | Ligusticum Chuanxiong | RKCVITGKKTTAGNNRSHAMNASKRTWGANLQKVRILVNGKPKKVYVSARALKSGKVE |
| 50S ribosomal protein L29 | V | 65 | Ligusticum Chuanxiong | MKANEIRDLTTAEIEQKVKSLKEELFNLRFQLATGQLENTARIREVRKAIARMKTVIREREIAAN |
| 50S ribosomal protein L30 | W | 58 | Ligusticum Chuanxiong | AKLEITLKRSVIGRPEDQRVTVRTLGLKKTNQTVVHEDNAAIRGMINKVSHLVSVKEQ |
| Ribosome hibernation promotion factor | X | 104 | Ligusticum Chuanxiong | MNYNIRGENIEVTPALKDHVERKIGKLERYFDHSVDADVNVNLKFYNDKESKVEVTIPMTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTKVNRKFREQES |
| 50S ribosomal protein L31 | Y | 64 | Ligusticum Chuanxiong | MKAGIHPNFKKATVKCACGNEFETGSVKEEVRVEICSECHPFYTGRQKFASADGRVDRFNKKYG |
| 50S ribosomal protein L5 | Z | 178 | Ligusticum Chuanxiong | NRLKEKYNKEIAPALMTKFNYDSVMQVPKIEKIVINMGVGDAVQNAKAIDSAVEELTFIAGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGERMYDFLDKLISVSLPRVRDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVTKVRGMDIVIVTTANTDEEARELLTQVGMPFQK |
| 30S ribosomal protein S3 | C | 210 | Ligusticum Chuanxiong | GQKVNPVGLRIGVIRDWESKWYAGKDYADFLHEDLKIREYISKRLSDASVSKVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINILEIKRADLDAQLVADNIARQLENRVSFRRAQKQQIQRTMRAGAQGVKTMVSGRLGGADIARSEYYSEGTVPLHTLRADIDYATSEADTTYGKLGVKVWIYRGEVLPTKK |
| 30S ribosomal protein S4 | D | 199 | Ligusticum Chuanxiong | ARYTGPSWKLSRRLGISLSGTGKELEKRPYAPGPHGPGQRKKLSEYGLQLQEKQKLRHMYGVNERQFRTLFDKAGKLAGKHGENFMILLDSRLDNVVYKLGLARTRRQARQLVNHGHILVDGSRVDIPSYLVKPGQTIGVREKSRNLSIIKESVEVNNFVPEYLTFDAEKLEGTFTRLPERSELAPEINEALIVEFYSR |
| 30S ribosomal protein S5 | E | 165 | Ligusticum Chuanxiong | RRIDPSKLELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEVPMVGTTIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVADILSKSLGSNTPINMIRATLQGLSELKRAEDVAKLRGKSVEELLG |
| 30S ribosomal protein S6 | F | 95 | Ligusticum Chuanxiong | MRKYEVMYIIRPNIDEESKKAVIERFNNVLTSNGAEITGTKDWGKRRLAYEINDFRDGFYQIVNVQSDAAAVQEFDRLAKISDDIIRHIVVKEEE |
| 30S ribosomal protein S7 | G | 153 | Ligusticum Chuanxiong | KGPVAKRDVLPDPIYNSKLVSRLINKMMIDGKKGKSQTILYKSFDIIKERTGNDAMEVFEQALKNIMPVLEVKARRVGGANYQVPVEVRPERRTTLGLRWLVNYARLRGEKTMEERLANEILDAANNTGAAVKKREDTHKMAEANKAFAHYRW |
| 30S ribosomal protein S8 | H | 131 | Ligusticum Chuanxiong | VMTDPIADMLTRIRNANMVRHEKLEIPASKLKREIAEILKREGFIRDVEFVEDSKQGIIRVFLKYGQNNERVITGLKRISKPGLRVYAKSNEVPRVLNGLGIAIISTSQGVLTDKEARAKQAGGEVLAYVW |
| 30S ribosomal protein S9 | I | 130 | Ligusticum Chuanxiong | MAQVQYYGTGRRKSSVARVRLVPGEGRIVVNNREISEHIPSAALIEDIKQPLTLTETAGTYDVLVNVHGGGLSGQAGAIRHGIARALLEADPEYRTTLKRAGLLTRDARMKERKKYGLKGARRAPQFSKR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2017-03-29 Deposition Author(s): Abdelshahid, M. , Arenz, S. , Bange, G. , Beckert, B. , Beckmann, R. , Berninghausen, O. , Schaefer, H. , Steinchen, W. , Turgay, K. , Wilson, D.N.