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5NFV

Crystal structure of catalytically inactive fncas12 mutant bound to an r-loop structure containing a pre-crrna mimic and full-length dna target

PDB DOI: 10.2210/pdb5nfv/pdb

Classification: HYDROLASE
Organism(s): Francisella Tularensis Subsp. Novicida (Strain U112) , Synthetic Construct

Deposited: 2017-03-16
Deposition Author(s): Jinek, M. , Swarts, D.C. , Van Der Oost, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.501 Å

5nfv
Literature

Crystal structure of catalytically inactive fncas12 mutant bound to an r-loop structure containing a pre-crrna mimic and full-length dna target

Jinek, M. , Swarts, D.C. , Van Der Oost, J.

Primary Citation of Related Structures: 5NFV


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease Cpf1 A 1302 Francisella Tularensis Subsp. Novicida (Strain U112) , Synthetic Construct SNASIYQEFVNKYSLSKTLRFELIPQGKTLENIKARGLILDDEKRAKDYKKAKQIIDKYHQFFIEEILSSVCISEDLLQNYSDVYFKLKKSDDDNLQKDFKSAKDTIKKQISEYIKDSEKFKNLFNQNLIDAKKGQESDLILWLKQSKDNGIELFKANSDITDIDEALEIIKSFKGWTTYFKGFHENRKNVYSSNDIPTSIIYRIVDDNLPKFLENKAKYESLKDKAPEAINYEQIKKDLAEELTFDIDYKTSEVNQRVFSLDEVFEIANFNNYLNQSGITKFNTIIGGKFVNGENTKRKGINEYINLYSQQINDKTLKKYKMSVLFKQILSDTESKSFVIDKLEDDSDVVTTMQSFYEQIAAFKTVEEKSIKETLSLLFDDLKAQKLDLSKIYFKNDKSLTDLSQQVFDDYSVIGTAVLEYITQQIAPKNLDNPSKKEQELIAKKTEKAKYLSLETIKLALEEFNKHRDIDKQCRFEEILANFAAIPMIFDEIAQNKDNLAQISIKYQNQGKKDLLQASAEDDVKAIKDLLDQTNNLLHKLKIFHISQSEDKANILDKDEHFYLVFEECYFELANIVPLYNKIRNYITQKPYSDEKFKLNFENSTLANGWDKNKEPDNTAILFIKDDKYYLGVMNKKNNKIFDDKAIKENKGEGYKKIVYKLLPGANKMLPKVFFSAKSIKFYNPSEDILRIRNHSTHTKNGSPQKGYEKFEFNIEDCRKFIDFYKQSISKHPEWKDFGFRFSDTQRYNSIDEFYREVENQGYKLTFENISESYIDSVVNQGKLYLFQIYNKDFSAYSKGRPNLHTLYWKALFDERNLQDVVYKLNGEAELFYRKQSIPKKITHPAKEAIANKNKDNPKKESVFEYDLIKDKRFTEDKFFFHCPITINFKSSGANKFNDEINLLLKEKANDVHILSIDRGERHLAYYTLVDGKGNIIKQDTFNIIGNDRMKTNYHDKLAAIEKDRDSARKDWKKINNIKEMKEGYLSQVVHEIAKLVIEYNAIVVFQDLNFGFKRGRFKVEKQVYQKLEKMLIEKLNYLVFKDNEFDKTGGVLRAYQLTAPFETFKKMGKQTGIIYYVPAGFTSKICPVTGFVNQLYPKYESVSKSQEFFSKFDKICYNLDKGYFEFSFDYKNFGDKAAKGKWTIASFGSRLINFRNSDKNHNWDTREVYPTKELEKLLKDYSIEYGHGECIKAAICGESDKKFFAKLTSVLNTILQMANSKTGTELDYLISPVADVNGNFFDSRQAPKNMPQDADANGAYHIGLKGLMLLGRIKNNQEGKKLNLVIKNEEYFEFVQNRNN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
pre-crRNA b 46 NA AAUAAUUUCUACUGUUGUAGAUAGAUUAAAAGGUAAUUCUAUCUUG
DNA target strand c 38 NA ATAGTTCATAGAATTACCTTTTAATCTTAAAGGACTGC
DNA non-target strand d 38 NA AGTCCTTTATCTAATTTTCCATTAAGATAGAACTATGC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-03-16
Deposition Author(s): Jinek, M. , Swarts, D.C. , Van Der Oost, J.