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5MJV
Rebuild and re-refined model for human parechovirus 1
PDB DOI: 10.2210/pdb5mjv/pdb
Classification: VIRUS Organism(s): Echovirus 22 (Strain Harris) , Human Parechovirus 1 (Strain Harris)
Deposited: 2016-12-01 Deposition Author(s): Butcher, S.J. , Cockburn, J.J.B. , Dykeman, E.C. , Ora, A. , Shakeel, S. , Stockley, P.G. , Twarock, R. , White, S.J.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.09 Å
Rebuild and re-refined model for human parechovirus 1
Butcher, S.J. , Cockburn, J.J.B. , Dykeman, E.C. , Ora, A. , Shakeel, S. , Stockley, P.G. , Twarock, R. , White, S.J.
Primary Citation of Related Structures: 5MJV
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| CAPSID SUBUNIT VP1 | A | 234 | Echovirus 22 (Strain Harris) , Human Parechovirus 1 (Strain Harris) | NSWGSQMDLTDPLCIEDDTENCKQTMSPNELGLTSAQDDGPLGQEKPNYFLNFRSMNVDIFTVSHTKVDNLFGRAWFFMEHTFTNEGQWRVPLEFPKQGHGSLSLLFAYFTGELNIHVLFLSERGFLRVAHTYDTSNDRVNFLSSNGVITVPAGEQMTLSAPYYSNKPLRTVRDNNSLGYLMCKPFLTGTSTGKIEVYLSLRCPNFFFPLPAPKVTSSRALRGDMANLTNQSPY |
| CAPSID SUBUNIT VP3 | B | 253 | Echovirus 22 (Strain Harris) , Human Parechovirus 1 (Strain Harris) | APNGKKKNWKKIMTMSTKYKWTRTKIDIAEGPGSMNMANVLCTTGAQSVALVGERAFYDPRTAGSKSRFDDLVKIAQLFSVMADSTTPSENHGVDAKGYFKWSATTAPQSIVHRNIVYLRLFPNLNVFVNSYSYFRGSLVLRLSVYASTFNRGRLRMGFFPNATTDSTSTLDNAIYTICDIGSDNSFEITIPYSFSTWMRKTNGHPIGLFQIEVLNRLTYNSSSPSEVYCIVQGKMGQDARFFCPTGSVVTFQ |
| CAPSID SUBUNIT VP0 | C | 289 | Echovirus 22 (Strain Harris) , Human Parechovirus 1 (Strain Harris) | METIKSIADMATGVVSSVDSTINAVNEKVESVGNEIGGNLLTKVADDASNILGPNCFATTAEPENKNVVQATTTVNTTNLTQHPSAPTMPFSPDFSNVDNFHSMAYDITTGDKNPSKLVRLETHEWTPSWARGYQITHVELPKVFWDHQDKPAYGQSRYFAAVRCGFHFQVQVNVNQGTAGSALVVYEPKPVVTYDSKLEFGAFTNLPHVLMNLAETTQADLCIPYVADTNYVKTDSSDLGQLKVYVWTPLSIPTGSANQVDVTILGSLLQLDFQNPRVFAQDVNIYDN |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA (5'-R(*GP*UP*UP*UP*UP*U)-3') | d | 6 | NA | GUUUUU |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2016-12-01 Deposition Author(s): Butcher, S.J. , Cockburn, J.J.B. , Dykeman, E.C. , Ora, A. , Shakeel, S. , Stockley, P.G. , Twarock, R. , White, S.J.