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5ME0
Structure of the 30s pre-initiation complex 1 (30s ic-1) stalled by ge81112
PDB DOI: 10.2210/pdb5me0/pdb
Classification: RIBOSOME Organism(s): Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579)
Deposited: 2016-11-14 Deposition Author(s): Brandi, L. , Connell, S. , Fabbretti, A. , Fucini, P. , Gil Carton, D. , Gualerzi, C. , Iturrioz, I. , Kaminishi, T. , Lopez-Alonso, J.P.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 13.5 Å
Structure of the 30s pre-initiation complex 1 (30s ic-1) stalled by ge81112
Brandi, L. , Connell, S. , Fabbretti, A. , Fucini, P. , Gil Carton, D. , Gualerzi, C. , Iturrioz, I. , Kaminishi, T. , Lopez-Alonso, J.P.
Primary Citation of Related Structures: 5ME0
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S ribosomal RNA | a | 1534 | NA | AAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGAAGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCA |
| fMet-tRNA | x | 77 | NA | CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGUUCAAAUCCGGCCCCCGCAACCA |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 30S ribosomal protein S10 | J | 103 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG |
| 30S ribosomal protein S11 | K | 129 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV |
| 30S ribosomal protein S12 | L | 123 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | ATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKXLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA |
| 30S ribosomal protein S13 | M | 118 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPIKK |
| 30S ribosomal protein S14 | N | 101 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW |
| 30S ribosomal protein S15 | O | 89 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIERLGLRR |
| 30S ribosomal protein S16 | P | 102 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MTPDSVPRWGPVVLFTQEDVMVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNKAA |
| 30S ribosomal protein S17 | Q | 84 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL |
| 30S ribosomal protein S18 | R | 75 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTDRHQ |
| 30S ribosomal protein S19 | S | 92 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK |
| 30S ribosomal protein S2 | B | 241 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRSQDLASQAEESFVEAE |
| 30S ribosomal protein S20 | T | 87 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA |
| 30S ribosomal protein S21 | U | 71 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY |
| Translation initiation factor IF-1 | V | 72 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MAKEKDTIRTEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIVYRK |
| Translation initiation factor IF-2 | W | 890 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MTDVTIKTLAAERQTSVERLVQQFADAGIRKSADDSVSAQEKQTLIDHLNQKNSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREAEESAKREAQQKAEREAAEQAKREAAEQAKREAAEKDKVSNQQDDMTKNAQAEKARREQEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTDNAEPTEDSSDYHVTTSQHARQAEDESDREVEGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIQRTIA |
| Translation initiation factor IF-3 | Y | 171 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | SKDFIINEQIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYGKFRFEQQKKEKEARKKQKVINVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEACADIAVVETAPKMDGRNMFLVLAPKNDNK |
| Translation initiation factor IF-3 | Z | 144 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MSLREALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQKKKQKVIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVESFPTKIEGRQMIMVLAPKKKQ |
| 30S ribosomal protein S3 | C | 233 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPEKPAAQPKKQQRKGRK |
| 30S ribosomal protein S4 | D | 206 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK |
| 30S ribosomal protein S5 | E | 167 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK |
| 30S ribosomal protein S6 | F | 131 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEE |
| 30S ribosomal protein S7 | G | 156 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW |
| 30S ribosomal protein S8 | H | 130 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA |
| 30S ribosomal protein S9 | I | 130 | Escherichia Coli K-12 , Geobacillus Stearothermophilus , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) | MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2016-11-14 Deposition Author(s): Brandi, L. , Connell, S. , Fabbretti, A. , Fucini, P. , Gil Carton, D. , Gualerzi, C. , Iturrioz, I. , Kaminishi, T. , Lopez-Alonso, J.P.