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5K5L

Homo sapiens ccctc-binding factor (ctcf) znf6-8 and h19 sequence dna complex structure

PDB DOI: 10.2210/pdb5k5l/pdb

Classification: TRANSCRIPTION/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2016-05-23
Deposition Author(s): Cheng, X. , Hashimoto, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.125 Å

5k5l
Literature

Homo sapiens ccctc-binding factor (ctcf) znf6-8 and h19 sequence dna complex structure

Cheng, X. , Hashimoto, H.

Primary Citation of Related Structures: 5K5L


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*TP*TP*GP*CP*CP*GP*CP*GP*TP*G)-3') a 11 NA GTTGCCGCGTG
DNA (5'-D(*GP*TP*TP*GP*CP*CP*GP*CP*GP*TP*G)-3') c 11 NA GTTGCCGCGTG
DNA (5'-D(P*AP*CP*GP*CP*GP*GP*CP*AP*AP*C)-3') b 11 NA CACGCGGCAAC
DNA (5'-D(P*AP*CP*GP*CP*GP*GP*CP*AP*AP*C)-3') d 11 NA CACGCGGCAAC

Proteins
Molecule Chains Sequence Length Organism Sequence
Transcriptional repressor CTCF E 93 Homo Sapiens , Synthetic Construct GPLGSKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNE
Transcriptional repressor CTCF F 93 Homo Sapiens , Synthetic Construct GPLGSKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNE
Transcriptional repressor CTCF G 93 Homo Sapiens , Synthetic Construct GPLGSKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNE
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-05-23
Deposition Author(s): Cheng, X. , Hashimoto, H.