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5JC3

Crystal structure of chicken mda5 with 5'p 10-mer dsrna and adp-mg2+ at 2.6 a resolution (monoclinic form, twinned).

PDB DOI: 10.2210/pdb5jc3/pdb

Classification: IMMUNE SYSTEM
Organism(s): Caldanaerobius , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2016-04-14
Deposition Author(s): Cusack, S. , Uchikawa, E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.6 Å

Literature

Crystal structure of chicken mda5 with 5'p 10-mer dsrna and adp-mg2+ at 2.6 a resolution (monoclinic form, twinned).

Cusack, S. , Uchikawa, E.

Primary Citation of Related Structures: 5JC3


Proteins
Molecule Chains Sequence Length Organism Sequence
Melanoma differentiation associated protein-5 A 701 Caldanaerobius , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GAMGDLTLRDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVNKVPLVEQHLRKEFNPFLKHWYQVIGLSGDSELKISFPEVVKRYDVIICTAQILENSLLNATEEDESVRLSDFSLIIIDQCHHTQKEGVYNNIMRRYLKEKIKNRKQAKENKPLIPQPQILGLTASPGVGGARSNSKAEEHILKICANLDACRIMTVKEHASQLKNQVKEPFKKTVIADDKRRDPFRERIIEIMQDIQKYCQLYPKSEFGSQPYEQWVIREERRAAKEEKRKERVCAEHLKKYNDALQINDTIRMVDAYNHLNNFYKELKRRKTAESDDDEEPLVSKQDETDEFLMRLFHAKKKQLKELARKPEYDNEKLMKLRNTLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFLIGAGHNSETKPMTQNEQREVIDKFRGGSINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFRENMMYKAIRRVQEMPPEEYLNKIQDFQLQSIVEKQMKAKRDQRKTYKKNPSLITFLCKNCHKLICSGEDIQVIENMHHVSVKKDFQHLYHKRENRTLQDKHADYQTNVEIICKDCGQVWGNMMVYRGLDLPCLKIRNFVVAFEDKKTTKEIFKKWGELPIIFPDFDYASH
Melanoma differentiation associated protein-5 B 701 Caldanaerobius , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GAMGDLTLRDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVNKVPLVEQHLRKEFNPFLKHWYQVIGLSGDSELKISFPEVVKRYDVIICTAQILENSLLNATEEDESVRLSDFSLIIIDQCHHTQKEGVYNNIMRRYLKEKIKNRKQAKENKPLIPQPQILGLTASPGVGGARSNSKAEEHILKICANLDACRIMTVKEHASQLKNQVKEPFKKTVIADDKRRDPFRERIIEIMQDIQKYCQLYPKSEFGSQPYEQWVIREERRAAKEEKRKERVCAEHLKKYNDALQINDTIRMVDAYNHLNNFYKELKRRKTAESDDDEEPLVSKQDETDEFLMRLFHAKKKQLKELARKPEYDNEKLMKLRNTLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFLIGAGHNSETKPMTQNEQREVIDKFRGGSINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFRENMMYKAIRRVQEMPPEEYLNKIQDFQLQSIVEKQMKAKRDQRKTYKKNPSLITFLCKNCHKLICSGEDIQVIENMHHVSVKKDFQHLYHKRENRTLQDKHADYQTNVEIICKDCGQVWGNMMVYRGLDLPCLKIRNFVVAFEDKKTTKEIFKKWGELPIIFPDFDYASH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') x 10 NA GGUACGUACC
RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') y 10 NA GGUACGUACC
RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') c 10 NA GGUACGUACC
RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') d 10 NA GGUACGUACC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-04-14
Deposition Author(s): Cusack, S. , Uchikawa, E.