PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5IY5

Electron transfer complex of cytochrome c and cytochrome c oxidase at 2.0 angstrom resolution

PDB DOI: 10.2210/pdb5iy5/pdb

Classification: OXIDOREDUCTASE
Organism(s): Parengyodontium Album , Bacteriophage Sfvi

Deposited: 2016-03-24
Deposition Author(s): Aoe, S. , Baba, J. , Shimada, A. , Shimada, S. , Tsukihara, T. , Yamashita, E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2 Å

5iy5
Literature

Electron transfer complex of cytochrome c and cytochrome c oxidase at 2.0 angstrom resolution

Aoe, S. , Baba, J. , Shimada, A. , Shimada, S. , Tsukihara, T. , Yamashita, E.

Primary Citation of Related Structures: 5IY5


Proteins
Molecule Chains Sequence Length Organism Sequence
Cytochrome c oxidase subunit 1 A 514 Parengyodontium Album , Bacteriophage Sfvi MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK
Cytochrome c oxidase subunit 1 N 514 Parengyodontium Album , Bacteriophage Sfvi MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK
Cytochrome c oxidase subunit 7A1, mitochondrial J 58 Parengyodontium Album , Bacteriophage Sfvi FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK
Cytochrome c oxidase subunit 7A1, mitochondrial W 58 Parengyodontium Album , Bacteriophage Sfvi FENRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWASFPHK
Cytochrome c oxidase subunit 7B, mitochondrial K 49 Parengyodontium Album , Bacteriophage Sfvi APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR
Cytochrome c oxidase subunit 7B, mitochondrial X 49 Parengyodontium Album , Bacteriophage Sfvi APDFHDKYGNAVLASGATFCVAVWVYMATQIGIEWNPSPVGRVTPKEWR
Cytochrome c oxidase subunit 7C, mitochondrial L 46 Parengyodontium Album , Bacteriophage Sfvi HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK
Cytochrome c oxidase subunit 7C, mitochondrial Y 46 Parengyodontium Album , Bacteriophage Sfvi HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK
Cytochrome c oxidase subunit 8B, mitochondrial M 43 Parengyodontium Album , Bacteriophage Sfvi ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS
Cytochrome c oxidase subunit 8B, mitochondrial Z 43 Parengyodontium Album , Bacteriophage Sfvi ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS
Cytochrome c 1 105 Parengyodontium Album , Bacteriophage Sfvi XGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKATNE
Cytochrome c 2 105 Parengyodontium Album , Bacteriophage Sfvi XGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKATNE
Cytochrome c oxidase subunit 2 B 227 Parengyodontium Album , Bacteriophage Sfvi MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML
Cytochrome c oxidase subunit 2 O 227 Parengyodontium Album , Bacteriophage Sfvi MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSASML
Cytochrome c oxidase subunit 3 C 259 Parengyodontium Album , Bacteriophage Sfvi HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
Cytochrome c oxidase subunit 3 P 259 Parengyodontium Album , Bacteriophage Sfvi HQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial D 144 Parengyodontium Album , Bacteriophage Sfvi SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial Q 144 Parengyodontium Album , Bacteriophage Sfvi SVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK
Cytochrome c oxidase subunit 5A, mitochondrial E 105 Parengyodontium Album , Bacteriophage Sfvi HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV
Cytochrome c oxidase subunit 5A, mitochondrial R 105 Parengyodontium Album , Bacteriophage Sfvi HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV
Cytochrome c oxidase subunit 5B, mitochondrial F 98 Parengyodontium Album , Bacteriophage Sfvi ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH
Cytochrome c oxidase subunit 5B, mitochondrial S 98 Parengyodontium Album , Bacteriophage Sfvi ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPHQLAH
Cytochrome c oxidase subunit 6A2, mitochondrial G 84 Parengyodontium Album , Bacteriophage Sfvi ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK
Cytochrome c oxidase subunit 6A2, mitochondrial T 84 Parengyodontium Album , Bacteriophage Sfvi ASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK
Cytochrome c oxidase subunit 6B1 H 79 Parengyodontium Album , Bacteriophage Sfvi KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI
Cytochrome c oxidase subunit 6B1 U 79 Parengyodontium Album , Bacteriophage Sfvi KIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI
Cytochrome c oxidase subunit 6C I 73 Parengyodontium Album , Bacteriophage Sfvi STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK
Cytochrome c oxidase subunit 6C V 73 Parengyodontium Album , Bacteriophage Sfvi STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-03-24
Deposition Author(s): Aoe, S. , Baba, J. , Shimada, A. , Shimada, S. , Tsukihara, T. , Yamashita, E.