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5GKE

Structure of endoms-dsdna1 complex

PDB DOI: 10.2210/pdb5gke/pdb

Classification: HYDROLASE/DNA
Organism(s): Vaccinia Virus Glv-1H68 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2016-07-04
Deposition Author(s): Hijikata, A. , Ishino, S. , Ishino, Y. , Kouyama, K. , Mayanagi, K. , Nakae, S. , Shirai, T. , Tsuji, T. , Yonezawa, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.4 Å

5gke
Literature

Structure of endoms-dsdna1 complex

Hijikata, A. , Ishino, S. , Ishino, Y. , Kouyama, K. , Mayanagi, K. , Nakae, S. , Shirai, T. , Tsuji, T. , Yonezawa, K.

Primary Citation of Related Structures: 5GKE


Proteins
Molecule Chains Sequence Length Organism Sequence
Endonuclease EndoMS A 252 Vaccinia Virus Glv-1H68 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSKDKVTVITSPSTEELVSLVNSALLEEAMLTIFARCKVHYDGRAKSELGSGDRVIIVKPDGSFLIHQSKKREPVNWQPPGSRVRLELRENPVLVSIRRKPRETLEVELEEVYMVSVFRAEDYEELALTGSEAEMAELIFENPEVIEPGFKPLFREKAIGTGIVAVLGRDSDGNIVVLELKRRRAELHAVRQLKSYVEILREEYGDKVRGILVAPSLTSGAKRLLEKEGLEFRKLEPPKRDSKKKGRQKTLF
Endonuclease EndoMS B 252 Vaccinia Virus Glv-1H68 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSKDKVTVITSPSTEELVSLVNSALLEEAMLTIFARCKVHYDGRAKSELGSGDRVIIVKPDGSFLIHQSKKREPVNWQPPGSRVRLELRENPVLVSIRRKPRETLEVELEEVYMVSVFRAEDYEELALTGSEAEMAELIFENPEVIEPGFKPLFREKAIGTGIVAVLGRDSDGNIVVLELKRRRAELHAVRQLKSYVEILREEYGDKVRGILVAPSLTSGAKRLLEKEGLEFRKLEPPKRDSKKKGRQKTLF

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*CP*GP*CP*TP*AP*CP*AP*TP*GP*TP*CP*GP*TP*CP*C)-3') c 15 NA CGCTACATGTCGTCC
DNA (5'-D(*GP*GP*AP*CP*GP*AP*CP*GP*TP*GP*TP*AP*GP*CP*G)-3') d 15 NA GGACGACGTGTAGCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-07-04
Deposition Author(s): Hijikata, A. , Ishino, S. , Ishino, Y. , Kouyama, K. , Mayanagi, K. , Nakae, S. , Shirai, T. , Tsuji, T. , Yonezawa, K.