5GIM
Crystal structure of thrombin-avathrin complex
PDB DOI: 10.2210/pdb5gim/pdb
Classification: hydrolase/hydrolase inhibitor Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2016-06-24 Deposition Author(s): Iyer, J.K. , Kini, R.M. , Koh, C.Y. , Swaminathan, K.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.09 Å
Crystal structure of thrombin-avathrin complex
Iyer, J.K. , Kini, R.M. , Koh, C.Y. , Swaminathan, K.
Primary Citation of Related Structures: 5GIM
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Thrombin light chain | A | 36 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR |
| thrombin heavy chain | B | 259 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE |
| N-terminal peptide from Putative uncharacterized protein avahiru | C | 10 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | SGGHQTAVPK |
| C-terminal peptide from Putative uncharacterized protein avahiru | D | 20 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | ISKQGLGGDFEEIPSDEIIE |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2016-06-24 Deposition Author(s): Iyer, J.K. , Kini, R.M. , Koh, C.Y. , Swaminathan, K.