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5EF6

Structure of hoxb13 complex with methylated dna

PDB DOI: 10.2210/pdb5ef6/pdb

Classification: TRANSCRIPTION
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2015-10-23
Deposition Author(s): Jolma, A. , Morgunova, E. , Popov, A. , Taipale, J. , Yin, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3 Å

5ef6
Literature

Structure of hoxb13 complex with methylated dna

Jolma, A. , Morgunova, E. , Popov, A. , Taipale, J. , Yin, Y.

Primary Citation of Related Structures: 5EF6


Proteins
Molecule Chains Sequence Length Organism Sequence
Homeobox protein Hox-B13 A 62 Homo Sapiens , Synthetic Construct RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKV
Homeobox protein Hox-B13 B 62 Homo Sapiens , Synthetic Construct RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKV
Homeobox protein Hox-B13 G 62 Homo Sapiens , Synthetic Construct RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKV
Homeobox protein Hox-B13 J 62 Homo Sapiens , Synthetic Construct RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*GP*GP*TP*CP*C)-3') c 18 NA TTGTGTTTTACGAGGTCC
DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*GP*GP*TP*CP*C)-3') d 18 NA TTGTGTTTTACGAGGTCC
DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*GP*GP*TP*CP*C)-3') h 18 NA TTGTGTTTTACGAGGTCC
DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*GP*GP*TP*CP*C)-3') k 18 NA TTGTGTTTTACGAGGTCC
DNA (5'-D(P*GP*GP*AP*CP*CP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3') f 18 NA GGACCTCGTAAAACACAA
DNA (5'-D(P*GP*GP*AP*CP*CP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3') e 18 NA GGACCTCGTAAAACACAA
DNA (5'-D(P*GP*GP*AP*CP*CP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3') i 18 NA GGACCTCGTAAAACACAA
DNA (5'-D(P*GP*GP*AP*CP*CP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3') l 18 NA GGACCTCGTAAAACACAA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2015-10-23
Deposition Author(s): Jolma, A. , Morgunova, E. , Popov, A. , Taipale, J. , Yin, Y.