PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5DDG

The structure of transcriptional factor arar from bacteroides thetaiotaomicron vpi in complex with target double strand dna

PDB DOI: 10.2210/pdb5ddg/pdb

Classification: TRANSCRIPTION REGULATOR/DNA
Organism(s): Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Nctc 10582 / E50 / Vpi-5482) , Synthetic Construct

Deposited: 2015-08-24
Deposition Author(s): Chang, C. , Joachimiak, A. , Midwest Center For Structural Genomics (Mcsg) , Rodionov, D. , Tesar, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.06 Å

5ddg
Literature

The structure of transcriptional factor arar from bacteroides thetaiotaomicron vpi in complex with target double strand dna

Chang, C. , Joachimiak, A. , Midwest Center For Structural Genomics (Mcsg) , Rodionov, D. , Tesar, C.

Primary Citation of Related Structures: 5DDG


Proteins
Molecule Chains Sequence Length Organism Sequence
transcriptional factor AraR A 228 Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Nctc 10582 / E50 / Vpi-5482) , Synthetic Construct SNAMKNYYSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPALIFDHPEMVDKAREMMKQKASVEPIGFNLLPKLFTLSQLQSLYEAIYGEPMDKRNFRKRVAEMDFIEKTDKIDKLGSKRGAALYKFNGKAYRKDPKFKL
transcriptional factor AraR B 228 Bacteroides Thetaiotaomicron (Strain Atcc 29148 / Dsm 2079 / Nctc 10582 / E50 / Vpi-5482) , Synthetic Construct SNAMKNYYSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPALIFDHPEMVDKAREMMKQKASVEPIGFNLLPKLFTLSQLQSLYEAIYGEPMDKRNFRKRVAEMDFIEKTDKIDKLGSKRGAALYKFNGKAYRKDPKFKL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (27-MER) c 27 NA GCAAAAGTGTTACTTTTACACCCATGC
DNA (27-MER) d 27 NA GCATGGGTGTAAAAGTAACACTTTTGC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2015-08-24
Deposition Author(s): Chang, C. , Joachimiak, A. , Midwest Center For Structural Genomics (Mcsg) , Rodionov, D. , Tesar, C.