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5CL7

Alkylpurine dna glycosylase alkd bound to dna containing a 3-methyladenine analog or dna containing an abasic site and a free nucleobase (18% substrate/82% product at 96 hours)

PDB DOI: 10.2210/pdb5cl7/pdb

Classification: HYDROLASE/DNA
Organism(s): Bacillus Cereus , Synthetic Construct

Deposited: 2015-07-16
Deposition Author(s): Eichman, B.F. , Mullins, E.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.44 Å

5cl7
Literature

Alkylpurine dna glycosylase alkd bound to dna containing a 3-methyladenine analog or dna containing an abasic site and a free nucleobase (18% substrate/82% product at 96 hours)

Eichman, B.F. , Mullins, E.A.

Primary Citation of Related Structures: 5CL7


Proteins
Molecule Chains Sequence Length Organism Sequence
AlkD A 241 Bacillus Cereus , Synthetic Construct GPVPMHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAAALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNYGINNEKIGETLS

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*CP*CP*CP*GP*AP*(DZM)P*AP*GP*TP*CP*CP*G)-3') b 12 NA CCCGAAAGTCCG
DNA (5'-D(*CP*GP*GP*AP*CP*TP*TP*TP*CP*GP*GP*G)-3') c 12 NA CGGACTTTCGGG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2015-07-16
Deposition Author(s): Eichman, B.F. , Mullins, E.A.