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5CG8

Ngtet1 in complex with 5hmc dna

PDB DOI: 10.2210/pdb5cg8/pdb

Classification: OXIDOREDUCTASE/DNA
Organism(s): Simian Virus 40 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2015-07-09
Deposition Author(s): Cheng, X. , Dai, N. , Hashimoto, H. , Pais, J.E. , Zhang, X. , Zheng, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.702 Å

5cg8
Literature

Ngtet1 in complex with 5hmc dna

Cheng, X. , Dai, N. , Hashimoto, H. , Pais, J.E. , Zhang, X. , Zheng, Y.

Primary Citation of Related Structures: 5CG8


Proteins
Molecule Chains Sequence Length Organism Sequence
Tet-like dioxygenase A 267 Simian Virus 40 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) HMINKKSLLQNLLSKCKTTFQQSFTNANITLKDEKWLKNVRTAYFVCDHDGSVELAYLPNVLPKELVEEFTEKFESIQTGRKKDTGYSGILDNSMPFNYVTADLSQELGQYLSEIVNPQINYYISKLLTCVSSRTINYLVSLNDSYYALNNCLYPSTAFNSLKPSNDGHRIRKPHKDNLDITPSSLFYFGNFQNTEGYLELTDKNCKVFVQPGDVLFFKGNEYKHVVANITSGWRIGLVYFAHKGSKTKPYYEDTQKNSLKIHKETK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*AP*GP*AP*AP*TP*TP*CP*CP*GP*TP*TP*CP*CP*A)-3') b 14 NA AGAATTCCGTTCCA
DNA (5'-D(*TP*GP*GP*AP*AP*(5HC)P*GP*GP*AP*AP*TP*TP*CP*T)-3') c 14 NA TGGAAXGGAATTCT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2015-07-09
Deposition Author(s): Cheng, X. , Dai, N. , Hashimoto, H. , Pais, J.E. , Zhang, X. , Zheng, Y.