4Z92
Crystal structure of parechovirus-1 virion
PDB DOI: 10.2210/pdb4z92/pdb
Classification: VIRUS Organism(s): Human Parechovirus 1 (Strain Harris)
Deposited: 2015-04-09 Deposition Author(s): Kalynych, S. , Palkova, L. , Plevka, P.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.1 Å
Crystal structure of parechovirus-1 virion
Kalynych, S. , Palkova, L. , Plevka, P.
Primary Citation of Related Structures: 4Z92
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| capsid subunit VP1 | A | 234 | Human Parechovirus 1 (Strain Harris) | NSWGSQMDLTDPLCIEDDTENCKQTMSPNELGLTSAQDDGPLGQEKPNYFLNFRSMNVDIFTVSHTKVDNLFGRAWFFMEHTFTNEGQWRVPLEFPKQGHGSLSLLFAYFTGELNIHVLFLSERGFLRVAHTYDTSNDRVNFLSSNGVITVPAGEQMTLSAPYYSNKPLRTVRDNNSLGYLMCKPFLTGTSTGKIEVYLSLRCPNFFFPLPAPKVTSSRALRGDMANLTNQSPY |
| Capsid subunit VP3 | B | 253 | Human Parechovirus 1 (Strain Harris) | APNGKKKNWKKIMTMSTKYKWTRTKIDIAEGPGSMNMANVLCTTGAQSVALVGERAFYDPRTAGSKSRFDDLVKIAQLFSVMADSTTPSENHGVDAKGYFKWSATTAPQSIVHRNIVYLRLFPNLNVFVNSYSYFRGSLVLRLSVYASTFNRGRLRMGFFPNATTDSTSTLDNAIYTICDIGSDNSFEITIPYSFSTWMRKTNGHPIGLFQIEVLNRLTYNSSSPSEVYCIVQGKMGQDARFFCPTGSVVTFQ |
| capsid subunit VP0 | C | 289 | Human Parechovirus 1 (Strain Harris) | METIKSIADMATGVVSSVDSTINAVNEKVESVGNEIGGNLLTKVADDASNILGPNCFATTAEPENKNVVQATTTVNTTNLTQHPSAPTMPFSPDFSNVDNFHSMAYDITTGDKNPSKLVRLETHEWTPSWARGYQITHVELPKVFWDHQDKPAYGQSRYFAAVRCGFHFQVQVNVNQGTAGSALVVYEPKPVVTYDSKLEFGAFTNLPHVLMNLAETTQADLCIPYVADTNYVKTDSSDLGQLKVYVWTPLSIPTGSANQVDVTILGSLLQLDFQNPRVFAQDVNIYDN |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA (5'-R(*AP*UP*UP*UP*UP*U)-3') | d | 6 | NA | AUUUUU |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2015-04-09 Deposition Author(s): Kalynych, S. , Palkova, L. , Plevka, P.