4TNH
Rt xfel structure of photosystem ii in the dark state at 4.9 a resolution
PDB DOI: 10.2210/pdb4tnh/pdb
Classification: ELECTRON TRANSPORT,PHOTOSYNTHESIS Organism(s): Thermosynechococcus Elongatus
Deposited: 2014-06-04 Deposition Author(s): Adams, P.D. , Alonso-Mori, R. , Bergmann, U. , Bogan, M.J. , Boutet, S. , Brewster, A. , Chatterjee, R. , Difiore, D. , Echols, N. , Fry, A.R. , Gallo, E. , Gildea, R.J. , Glatzel, P. , Gloeckner, C. , Gul, S. , Han, G. , Hattne, J. , Hellmich, J. , Ibrahim, M. , Kern, J. , Koglin, J.E. , Koroidov, S. , Laksmono, H. , Lampe, A. , Lassalle-Kaiser, B. , Messerschmidt, M. , Messinger, J. , Milathianaki, D. , Sauter, N.K. , Seibert, M.M. , Sierra, R.G. , Skinner, D.E. , Sokaras, D. , Stan, C.A. , Tran, R. , Uhlig, J. , Weng, T.-C. , Williams, G.J. , Yachandra, V.K. , Yano, J. , Zouni, A. , Zwart, P.H.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 4.90001 Å
Rt xfel structure of photosystem ii in the dark state at 4.9 a resolution
Adams, P.D. , Alonso-Mori, R. , Bergmann, U. , Bogan, M.J. , Boutet, S. , Brewster, A. , Chatterjee, R. , Difiore, D. , Echols, N. , Fry, A.R. , Gallo, E. , Gildea, R.J. , Glatzel, P. , Gloeckner, C. , Gul, S. , Han, G. , Hattne, J. , Hellmich, J. , Ibrahim, M. , Kern, J. , Koglin, J.E. , Koroidov, S. , Laksmono, H. , Lampe, A. , Lassalle-Kaiser, B. , Messerschmidt, M. , Messinger, J. , Milathianaki, D. , Sauter, N.K. , Seibert, M.M. , Sierra, R.G. , Skinner, D.E. , Sokaras, D. , Stan, C.A. , Tran, R. , Uhlig, J. , Weng, T.-C. , Williams, G.J. , Yachandra, V.K. , Yano, J. , Zouni, A. , Zwart, P.H.
Primary Citation of Related Structures: 4TNH
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem Q(B) protein 1 | A | 344 | Thermosynechococcus Elongatus | MTTTLQRRESANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEVMHERNAHNFPLDLA |
| Photosystem II reaction center protein K | K | 46 | Thermosynechococcus Elongatus | MIDALVLVAKLPEAYAIFDPLVDVLPVIPVLFLALAFVWQAAVGFR |
| Photosystem II reaction center protein L | L | 37 | Thermosynechococcus Elongatus | MEPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN |
| Photosystem II reaction center protein M | M | 36 | Thermosynechococcus Elongatus | MEVNQLGLIATALFVLVPSVFLIILYVQTESQQKSS |
| Photosystem II manganese-stabilizing polypeptide | O | 272 | Thermosynechococcus Elongatus | MKYRILMATLLAVCLGIFSLSAPAFAAKQTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA |
| Photosystem II reaction center protein T | T | 32 | Thermosynechococcus Elongatus | METITYVFIFACIIALFFFAIFFREPPRITKK |
| Photosystem II 12 kDa extrinsic protein | U | 134 | Thermosynechococcus Elongatus | MQRLGRWLALAYFVGVSLLGWINWSAPTLAATASTEEELVNVVDEKLGTAYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTEVETALVEGGDRYNNGLYK |
| Cytochrome c-550 | V | 163 | Thermosynechococcus Elongatus | MLKKCVWLAVALCLCLWQFTMGTALAAELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKWGGGKVYY |
| Photosystem II reaction center protein Y | Y | 28 | Thermosynechococcus Elongatus | XXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Photosystem II reaction center protein Y | G | 28 | Thermosynechococcus Elongatus | XXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Photosystem II reaction center X protein | X | 41 | Thermosynechococcus Elongatus | MTITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRSL |
| Photosystem II core light harvesting protein | B | 510 | Thermosynechococcus Elongatus | MGLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSGIDPELSPEQVEWGFYQKVGDVTTRRKEAV |
| Photosystem II reaction center protein Z | Z | 62 | Thermosynechococcus Elongatus | MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVLVVGVLNFFVV |
| Photosystem II CP43 protein | C | 461 | Thermosynechococcus Elongatus | MVTLSSNSIFATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRESEPVLSMPSLD |
| Photosystem II D2 protein | D | 352 | Thermosynechococcus Elongatus | MTIAIGRAPAERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 84 | Thermosynechococcus Elongatus | MAGTTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQLK |
| Cytochrome b559 subunit beta | F | 45 | Thermosynechococcus Elongatus | MTSNTPNQEPVSYPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR |
| Photosystem II reaction center protein H | H | 66 | Thermosynechococcus Elongatus | MARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKALG |
| Photosystem II reaction center protein I | I | 38 | Thermosynechococcus Elongatus | METLKITVYIVVTFFVLLFVFGFLSGDPARNPKRKDLE |
| Photosystem II reaction center protein J | J | 40 | Thermosynechococcus Elongatus | MMSEGGRIPLWIVATVAGMGVIVIVGLFFYGAYAGLGSSL |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2014-06-04 Deposition Author(s): Adams, P.D. , Alonso-Mori, R. , Bergmann, U. , Bogan, M.J. , Boutet, S. , Brewster, A. , Chatterjee, R. , Difiore, D. , Echols, N. , Fry, A.R. , Gallo, E. , Gildea, R.J. , Glatzel, P. , Gloeckner, C. , Gul, S. , Han, G. , Hattne, J. , Hellmich, J. , Ibrahim, M. , Kern, J. , Koglin, J.E. , Koroidov, S. , Laksmono, H. , Lampe, A. , Lassalle-Kaiser, B. , Messerschmidt, M. , Messinger, J. , Milathianaki, D. , Sauter, N.K. , Seibert, M.M. , Sierra, R.G. , Skinner, D.E. , Sokaras, D. , Stan, C.A. , Tran, R. , Uhlig, J. , Weng, T.-C. , Williams, G.J. , Yachandra, V.K. , Yano, J. , Zouni, A. , Zwart, P.H.