4Q9R
Crystal structure of an rna aptamer bound to trifluoroethyl-ligand analog in complex with fab
PDB DOI: 10.2210/pdb4q9r/pdb
Classification: RNA/immune system Organism(s): Mus Musculus , Synthetic Construct
Deposited: 2014-05-01 Deposition Author(s): Evans, M.E. , Huang, H. , Koldobskaya, Y. , Li, N.-S. , Piccirilli, J.A. , Rice, P.A. , Shelke, S.A. , Suslov, N.B.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.12 Å
Crystal structure of an rna aptamer bound to trifluoroethyl-ligand analog in complex with fab
Evans, M.E. , Huang, H. , Koldobskaya, Y. , Li, N.-S. , Piccirilli, J.A. , Rice, P.A. , Shelke, S.A. , Suslov, N.B.
Primary Citation of Related Structures: 4Q9R
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Fab BL3-6, HEAVY CHAIN | H | 223 | Mus Musculus , Synthetic Construct | EVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK |
| Fab BL3-6, LIGHT CHAIN | L | 214 | Mus Musculus , Synthetic Construct | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPSTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Spinach RNA aptamer | r | 84 | NA | GGACGCGACCGAAAUGGUGAAGGACGGGUCCAGUGCGAAACACGCACUGUUGAGUAGAGUGUGAGCUCCGUAACUGGUCGCGUC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2014-05-01 Deposition Author(s): Evans, M.E. , Huang, H. , Koldobskaya, Y. , Li, N.-S. , Piccirilli, J.A. , Rice, P.A. , Shelke, S.A. , Suslov, N.B.