4PEI
Dbr1 in complex with synthetic branched rna analog
PDB DOI: 10.2210/pdb4pei/pdb
Classification: HYDROLASE/RNA Organism(s): Entamoeba Histolytica , Synthetic Construct
Deposited: 2014-04-23 Deposition Author(s): Clark, N.E. , Combs, D.J. , Damha, M.J. , Hart, P.J. , Holloway, S.P. , Johnsson, R. , Katolik, A. , Montemayor, E.J. , Schuermann, J.P. , Stevens, S.W. , Taylor, A.B.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.95 Å
Dbr1 in complex with synthetic branched rna analog
Clark, N.E. , Combs, D.J. , Damha, M.J. , Hart, P.J. , Holloway, S.P. , Johnsson, R. , Katolik, A. , Montemayor, E.J. , Schuermann, J.P. , Stevens, S.W. , Taylor, A.B.
Primary Citation of Related Structures: 4PEI
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA lariat debranching enzyme, putative | A | 356 | Entamoeba Histolytica , Synthetic Construct | GAMATEQIQHIAIVGSVHGKYREMYRQLSEYEKSTGKEISFVICTGDMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLTLFIGGNHESSNVLLHLYNGGFVCFNMYYLGVCSCININGLRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFHTRNYVIQMLSNLSQSSQIDISLSHDWPQGIVMKGNYKQLYRFQPGFKKDGASLGSPINKVILNTLKPKYWISGHMHCEYHAEEGPTHFIALGKIGYKNAISYLDLPLKQKTDLEYDKDWVCNLIMTWPAFSNKAQFPDLSYSISELLSKRTKELDKKIIELWEKYIGLKIIYDSDTFDIQFTSRRFYIEKIYNELNIN |
| RNA lariat debranching enzyme, putative | B | 356 | Entamoeba Histolytica , Synthetic Construct | GAMATEQIQHIAIVGSVHGKYREMYRQLSEYEKSTGKEISFVICTGDMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLTLFIGGNHESSNVLLHLYNGGFVCFNMYYLGVCSCININGLRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFHTRNYVIQMLSNLSQSSQIDISLSHDWPQGIVMKGNYKQLYRFQPGFKKDGASLGSPINKVILNTLKPKYWISGHMHCEYHAEEGPTHFIALGKIGYKNAISYLDLPLKQKTDLEYDKDWVCNLIMTWPAFSNKAQFPDLSYSISELLSKRTKELDKKIIELWEKYIGLKIIYDSDTFDIQFTSRRFYIEKIYNELNIN |
| RNA lariat debranching enzyme, putative | C | 356 | Entamoeba Histolytica , Synthetic Construct | GAMATEQIQHIAIVGSVHGKYREMYRQLSEYEKSTGKEISFVICTGDMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLTLFIGGNHESSNVLLHLYNGGFVCFNMYYLGVCSCININGLRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFHTRNYVIQMLSNLSQSSQIDISLSHDWPQGIVMKGNYKQLYRFQPGFKKDGASLGSPINKVILNTLKPKYWISGHMHCEYHAEEGPTHFIALGKIGYKNAISYLDLPLKQKTDLEYDKDWVCNLIMTWPAFSNKAQFPDLSYSISELLSKRTKELDKKIIELWEKYIGLKIIYDSDTFDIQFTSRRFYIEKIYNELNIN |
| RNA lariat debranching enzyme, putative | D | 356 | Entamoeba Histolytica , Synthetic Construct | GAMATEQIQHIAIVGSVHGKYREMYRQLSEYEKSTGKEISFVICTGDMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLTLFIGGNHESSNVLLHLYNGGFVCFNMYYLGVCSCININGLRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFHTRNYVIQMLSNLSQSSQIDISLSHDWPQGIVMKGNYKQLYRFQPGFKKDGASLGSPINKVILNTLKPKYWISGHMHCEYHAEEGPTHFIALGKIGYKNAISYLDLPLKQKTDLEYDKDWVCNLIMTWPAFSNKAQFPDLSYSISELLSKRTKELDKKIIELWEKYIGLKIIYDSDTFDIQFTSRRFYIEKIYNELNIN |
| RNA lariat debranching enzyme, putative | E | 356 | Entamoeba Histolytica , Synthetic Construct | GAMATEQIQHIAIVGSVHGKYREMYRQLSEYEKSTGKEISFVICTGDMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLTLFIGGNHESSNVLLHLYNGGFVCFNMYYLGVCSCININGLRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFHTRNYVIQMLSNLSQSSQIDISLSHDWPQGIVMKGNYKQLYRFQPGFKKDGASLGSPINKVILNTLKPKYWISGHMHCEYHAEEGPTHFIALGKIGYKNAISYLDLPLKQKTDLEYDKDWVCNLIMTWPAFSNKAQFPDLSYSISELLSKRTKELDKKIIELWEKYIGLKIIYDSDTFDIQFTSRRFYIEKIYNELNIN |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA (5'-R(*UP*AP*AP*CP*A)-3') | v | 5 | NA | UAACA |
| RNA (5'-R(*UP*AP*AP*CP*A)-3') | w | 5 | NA | UAACA |
| RNA (5'-R(*UP*AP*AP*CP*A)-3') | x | 5 | NA | UAACA |
| RNA (5'-R(*UP*AP*AP*CP*A)-3') | y | 5 | NA | UAACA |
| RNA (5'-R(*UP*AP*AP*CP*A)-3') | z | 5 | NA | UAACA |
| RNA (5'-R(*(G46)P*U)-3') | q | 2 | NA | GU |
| RNA (5'-R(*(G46)P*U)-3') | r | 2 | NA | GU |
| RNA (5'-R(*(G46)P*U)-3') | s | 2 | NA | GU |
| RNA (5'-R(*(G46)P*U)-3') | t | 2 | NA | GU |
| RNA (5'-R(*(G46)P*U)-3') | u | 2 | NA | GU |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2014-04-23 Deposition Author(s): Clark, N.E. , Combs, D.J. , Damha, M.J. , Hart, P.J. , Holloway, S.P. , Johnsson, R. , Katolik, A. , Montemayor, E.J. , Schuermann, J.P. , Stevens, S.W. , Taylor, A.B.