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4JV1

Ternary complex of gamma-ohpdg adduct modified dna with dna (-1 primer) polymerase iv and incoming dgtp

PDB DOI: 10.2210/pdb4jv1/pdb

Classification: TRANSFERASE/DNA
Organism(s): Paramecium Tetraurelia Strain D4-2 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2013-03-25
Deposition Author(s): Banerjee, S. , Shanmugam, G. , Stone, M.P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.3 Å

4jv1
Literature

Ternary complex of gamma-ohpdg adduct modified dna with dna (-1 primer) polymerase iv and incoming dgtp

Banerjee, S. , Shanmugam, G. , Stone, M.P.

Primary Citation of Related Structures: 4JV1


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase IV A 347 Paramecium Tetraurelia Strain D4-2 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) HHHHHHMIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*CP*(HN1)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3') b 15 NA CXGAATCCTTCCCCC
DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3') c 13 NA GGGGGAAGGATTC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2013-03-25
Deposition Author(s): Banerjee, S. , Shanmugam, G. , Stone, M.P.