PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

4GWQ

Structure of the mediator head module from s. cerevisiae in complex with the carboxy-terminal domain (ctd) of rna polymerase ii rpb1 subunit

PDB DOI: 10.2210/pdb4gwq/pdb

Classification: TRANSCRIPTION
Organism(s): Saccharomyces Cerevisiae , Saccharomyces Cerevisiae S288C , Synthetic Construct

Deposited: 2012-09-03
Deposition Author(s): Burlingame, A.L. , Bushnell, D.A. , Kornberg, R.D. , Robinson, P.J.J. , Trnka, M.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 4.5 Å

4gwq
Literature

Structure of the mediator head module from s. cerevisiae in complex with the carboxy-terminal domain (ctd) of rna polymerase ii rpb1 subunit

Burlingame, A.L. , Bushnell, D.A. , Kornberg, R.D. , Robinson, P.J.J. , Trnka, M.J.

Primary Citation of Related Structures: 4GWQ


Proteins
Molecule Chains Sequence Length Organism Sequence
Mediator of RNA polymerase II transcription subunit 11 A 115 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae S288C , Synthetic Construct MQPPYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVGTRLLPINVNKKALGQDTEKMEEQLDLLSAILDPSKSK
Mediator of RNA polymerase II transcription subunit 17 B 687 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae S288C , Synthetic Construct MTTEDPDSNHLSSETGIKLALDPNLITLALSSNPNSSLHSPTSDEPVPESAGKADTSIRLEGDELENKTKKDNDKNLKFLKNKDSLVSNPHEIYGSMPLEQLIPIILRQRGPGFKFVDLNEKELQNEIKQLGSDSSDGHNSEKKDTDGADENVQIGEDFMEVDYEDKDNPVDSRNETDHKTNENGETDDNIETVMTQEQFVKRRRDMLEHINLAMNESSLALEFVSLLLSSVKESTGMSSMSPFLRKVVKPSSLNSDKIPYVAPTKKEYIELDILNKGWKLQSLNESKDLLRASFNKLSSILQNEHDYWNKIMQSISNKDVIFKIRDRTSGQKLLAIKYGYEDSGSTYKHDRGIANIRNNIESQNLDLIPHSSSVFKGTDFVHSVKKFLRVRIFTKIESEDDYILSGESVMDRDSESEEAETKDIRKQIQLLKKIIFEKELMYQIKKECALLISYGVSIENENKVIIELPNEKFEIELLSLDDDSIVNHEQDLPKINDKRANLMLVMLRLLLVVIFKKTLRSRISSPHGLINLNVDDDILIIRPILGKVRFANYKLLLKKIIKDYVLDIVPGSSITETEVEREQPQENKNIDDENITKLNKEIRAFDKLLNIPRRELKINLPLTEHKSPNLSLMLESPNYCNALIHIKFSAGTEANAVSFDTTFSDFKEVEDFLHFIVAEYIQQKKV
Mediator of RNA polymerase II transcription subunit 8 C 407 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae S288C , Synthetic Construct MSQSTASLVPEGNQGSLQEDVSFDFNGVPGQALDAVRMRLAQLTHSLRRIRDEMSKAELPQWYTLQSQLNVTLSQLVSVTSTLQHFQETLDSTVVYPLPKFPTTSHESLVTTLLRKKNIPEVDEWMKYVRETSGVTTALLKDEEIEKLLQQDREITNWARTTFRNEYGKHDFKNEESLSEEHASLLVRDSKPSKPFNVDDVLKFTFTGEKPIITGSTSTSSSNSMEKRRWKKNFIAVSAANRFKKISSSGALDYDIPTTASENLYFQGELKTAALAQHDEAVDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAPKVDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNGAQAPKVDANSAGKST
Mediator of RNA polymerase II transcription subunit 22 D 121 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae S288C , Synthetic Construct MSNQALYEKLEQTRTILSVKLAELINMTTIADRNDDDEGSFAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWLLNQIPVTEHSKVTRFDEKQIEELLDNCIETFVAEKTT
Mediator of RNA polymerase II transcription subunit 18 E 307 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae S288C , Synthetic Construct MVQQLSLFGSIGDDGYDLLISTLTTISGNPPLLYNSLCTVWKPNPSYDVENVNSRNQLVEPNRIKLSKEVPFSYLIDETMMDKPLNFRILKSFTNDKIPLNYAMTRNILHNTVPQVTNFNSTNEDQNNSKHTEDTVNESRNSDDIIDVDMDASPAPSNESCSPWSLQISDIPAAGNNRSVSMQTIAETIILSSAGKNSSVSSLMNGLGYVFEFQYLTIGVKFFMKHGLILELQKIWQIEEAGNSQITSGGFLLKAYINVSRGTDIDRINYTETALMNLKKELQGYIELSVPDRQSMDSRVAHGNILI
Mediator of RNA polymerase II transcription subunit 20 F 210 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae S288C , Synthetic Construct MGKSAVIFVERATPATLTELKDALSNSILSVRDPWSIDFRTYRCSIKNLPADVSKLMYSITFHHHGRQTVLIKDNSAMVTTAAAADIPPALVFNGSSTGVPESIDTILSSKLSNIWMQRQLIKGDAGETLILDGLTVRLVNLFSSTGFKGLLIELQADEAGEFETKIAGIEGHLAEIRAKEYKTSSDSLGPDTSNEICDLAYQYVRALEL
Mediator of RNA polymerase II transcription subunit 6 G 295 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae S288C , Synthetic Construct MNVTPLDELQWKSPEWIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNAAVNMTQNIMTLPDGKNGNLEEEFAYVDPARRQILFKYPMYMQLEEELMKLDGTEYVLSSVREPDFWVIRKQRRTNNSGVGSAKGPEIIPLQDYYIIGANIYQSPTIFKIVQSRLMSTSYHLNSTLESLYDLIEFQPSQGVHYKVPTDTSTTATAATNGNNAGGGSNKSSVRPTGGANMATVPSTTNVNMTVNTMGTGGQTIDNGTGRTGNGNMGITTEMLDKLMVTSIRSTPNYI
DNA-directed RNA polymerase II subunit RPB1 H 35 Saccharomyces Cerevisiae , Saccharomyces Cerevisiae S288C , Synthetic Construct YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2012-09-03
Deposition Author(s): Burlingame, A.L. , Bushnell, D.A. , Kornberg, R.D. , Robinson, P.J.J. , Trnka, M.J.