4B3O
Structures of hiv-1 rt and rna-dna complex reveal a unique rt conformation and substrate interface
PDB DOI: 10.2210/pdb4b3o/pdb
Classification: HYDROLASE/DNA/RNA Organism(s): Human Immunodeficiency Virus 1 , Synthetic Construct
Deposited: 2012-07-25 Deposition Author(s): Lapkouski, M. , Le Grice, S.F.J. , Miller, J.T. , Tian, L. , Yang, W.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.3 Å
Structures of hiv-1 rt and rna-dna complex reveal a unique rt conformation and substrate interface
Lapkouski, M. , Le Grice, S.F.J. , Miller, J.T. , Tian, L. , Yang, W.
Primary Citation of Related Structures: 4B3O
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| REVERSE TRANSCRIPTASE/RIBONUCLEASE H | A | 560 | Human Immunodeficiency Virus 1 , Synthetic Construct | PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDGTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWVPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKIL |
| P51 RT | B | 441 | Human Immunodeficiency Virus 1 , Synthetic Construct | GPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDGTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWVPEWEFVNTPPLVKLWYQLEKEPIVGAETF |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*CP*GP*TP*AP*TP*GP*CP*CP*TP*AP*TP*AP*GP*TP *TP*AP*TP*TP*GP*TP*GP*GP*CP*C)-3' | d | 24 | NA | CGTATGCCTATAGTTATTGTGGCC |
| 5'-R(*AP*UP*GP*AP*3DRP*GP*GP*CP*CP*AP*CP*AP*AP*UP*AP *AP*CP*UP*AP*UP*AP*GP*GP*CP*AP*UP*A)-3' | r | 27 | NA | AUGANGGCCACAAUAACUAUAGGCAUA |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2012-07-25 Deposition Author(s): Lapkouski, M. , Le Grice, S.F.J. , Miller, J.T. , Tian, L. , Yang, W.