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FASTA Sequence PDB Format mmCIF Format
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4A2I

Cryo-electron microscopy structure of the 30s subunit in complex with the yjeq biogenesis factor

PDB DOI: 10.2210/pdb4a2i/pdb

Classification: RIBOSOME/HYDROLASE
Organism(s): Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium

Deposited: 2011-09-27
Deposition Author(s): Brown, E.D. , Jomaa, A. , Kireeva, I. , Mears, J.A. , Ortega, J. , Stewart, G.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 16.5 Å

Literature

Cryo-electron microscopy structure of the 30s subunit in complex with the yjeq biogenesis factor

Brown, E.D. , Jomaa, A. , Kireeva, I. , Mears, J.A. , Ortega, J. , Stewart, G.

Primary Citation of Related Structures: 4A2I


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
16S RIBOSOMAL RNA a 1530 NA UGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGAAGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCA

Proteins
Molecule Chains Sequence Length Organism Sequence
30S RIBOSOMAL PROTEIN S10 J 98 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL
30S RIBOSOMAL PROTEIN S11 K 117 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV
30S RIBOSOMAL PROTEIN S12 L 123 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium ATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA
30S RIBOSOMAL PROTEIN S13 M 114 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKP
30S RIBOSOMAL PROTEIN S14 N 100 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium AKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW
30S RIBOSOMAL PROTEIN S15 O 88 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTRLIERLGLRR
30S RIBOSOMAL PROTEIN S16 P 82 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNKAA
30S RIBOSOMAL PROTEIN S17 Q 80 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAV
30S RIBOSOMAL PROTEIN S18 R 55 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium EIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTDRH
30S RIBOSOMAL PROTEIN S19 S 79 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYR
30S RIBOSOMAL PROTEIN S2 B 218 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRS
30S RIBOSOMAL PROTEIN S20 T 85 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium NIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA
30S RIBOSOMAL PROTEIN S21 U 51 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium IKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVK
PUTATIVE RIBOSOME BIOGENESIS GTPASE RSGA V 277 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium LFGEPAEGIVISRFGMHADVESADGEVHRCNIRRTIRSLVTGDRVVWRPGKVKGIVEAVHETSVLTRPVKPIAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQNEILTNTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVENGAIAETRFENYHRILESMA
30S RIBOSOMAL PROTEIN S3 C 206 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium GQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEI
30S RIBOSOMAL PROTEIN S4 D 205 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK
30S RIBOSOMAL PROTEIN S5 E 150 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium ELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGK
30S RIBOSOMAL PROTEIN S6 F 100 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEAS
30S RIBOSOMAL PROTEIN S7 G 150 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium RRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFA
30S RIBOSOMAL PROTEIN S8 H 129 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium SMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA
30S RIBOSOMAL PROTEIN S9 I 127 Escherichia Coli , Salmonella Enterica Subsp. Enterica Serovar Typhimurium NQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2011-09-27
Deposition Author(s): Brown, E.D. , Jomaa, A. , Kireeva, I. , Mears, J.A. , Ortega, J. , Stewart, G.